SMTL ID : 5vvg.1

Structure of bovine endothelial nitric oxide synthase heme domain in complex with 4-(2-(((2-Aminoquinolin-7-yl)methyl)amino)ethyl)-2-chlorobenzonitrile

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: W.141, A.144, R.146, C.147, V.148, G.149, S.189, M.302, F.316, S.317, W.319, M.321, E.324, W.410, F.436, Y.438 Ligands: H4B.2, 9PM.3 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:W.141, A:W.141, A:W.141, A:A.144, A:R.146, A:V.148, A:F.316, A:F.316, A:F.316, A:W.319, A:W.319, A:E.324, A:F.436, A:F.436, A:F.436 Hydrogen bonds: A:Y.438 Water bridges: A:E.324, A:R.328 pi-Stacking: A:W.141 Metal complexes: A:C.147 HEM.6: 21 residues within 4Å: Chain B: W.141, A.144, R.146, C.147, V.148, G.149, L.156, S.189, M.302, F.316, S.317, G.318, W.319, M.321, E.324, V.381, W.410, F.436, Y.438 Ligands: H4B.7, 9PM.8 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:W.141, B:W.141, B:W.141, B:A.144, B:R.146, B:L.156, B:F.316, B:F.316, B:F.316, B:W.319, B:W.319, B:E.324, B:V.381, B:F.436, B:F.436, B:F.436 pi-Stacking: B:W.141 Metal complexes: B:C.147

2 x H4B: 5,6,7,8-TETRAHYDROBIOPTERIN(Non-covalent)

H4B.2: 12 residues within 4Å: Chain A: S.65, V.67, R.328, A.409, W.410 Chain B: W.408, F.423, H.424, Q.425, E.426 Ligands: HEM.1, GOL.4 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:E.426 Hydrogen bonds: A:R.328, A:A.409, A:W.410 pi-Stacking: A:W.410, A:W.410 H4B.7: 12 residues within 4Å: Chain A: W.408, F.423, H.424, Q.425, E.426 Chain B: S.65, V.67, R.328, A.409, W.410 Ligands: HEM.6, GOL.9 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.328, B:R.328, B:A.409, B:W.410 pi-Stacking: B:W.410, B:W.410 Hydrophobic interactions: A:E.426

2 x 9PM: 4-(2-{[(2-aminoquinolin-7-yl)methyl]amino}ethyl)-2-chlorobenzonitrile(Non-covalent)

9PM.3: 13 residues within 4Å: Chain A: V.67, L.68, P.297, V.299, F.316, W.319, Y.320, E.324, W.410, Y.438 Chain B: W.37 Ligands: HEM.1, GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.67, A:V.299, A:F.316, A:W.410, A:Y.438 Hydrogen bonds: A:W.319 9PM.8: 13 residues within 4Å: Chain A: W.37 Chain B: V.67, L.68, P.297, V.299, F.316, W.319, Y.320, E.324, W.410, Y.438 Ligands: HEM.6, GOL.9 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.67, B:L.68, B:V.299, B:F.316, B:W.410, B:Y.438 Hydrogen bonds: B:W.319

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: R.328, H.334 Chain B: W.37, H.424 Ligands: H4B.2, 9PM.3 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.328, A:R.328, B:H.424 GOL.9: 7 residues within 4Å: Chain A: W.37 Chain B: V.67, R.328, H.334, W.410 Ligands: H4B.7, 9PM.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.328, B:R.328, B:H.334 Water bridges: B:D.332

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain B: W.319 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.10: 4 residues within 4Å: Chain A: C.57, C.62 Chain B: C.57, C.62 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.57, A:C.62, B:C.57, B:C.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pensa, A.V. et al., Hydrophilic, Potent, and Selective 7-Substituted 2-Aminoquinolines as Improved Human Neuronal Nitric Oxide Synthase Inhibitors. J. Med. Chem. (2017)

Release Date

2017-08-16

Peptides

Nitric oxide synthase, endothelial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nitric oxide synthase, endothelial

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