- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x 9TD: 1-carboxy-1-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]azaniumyl}-2-[(3R)-2-oxo-2,3-dihydro-1H-indol-3-yl]ethan-1-ide(Non-covalent)
9TD.2: 24 residues within 4Å:- Chain A: F.37, L.49, T.50, S.52, Q.99, G.100, R.101, E.104, F.132, D.133, T.134, T.135, T.190, N.194, D.223, R.226, S.263, K.265, K.266, V.389, L.395, R.414, F.459
- Chain B: Y.72
30 PLIP interactions:30 interactions with chain A- Hydrophobic interactions: A:F.37, A:F.132, A:F.132, A:T.190, A:V.389, A:L.395
- Hydrogen bonds: A:D.51, A:S.52, A:S.52, A:Q.99, A:G.100, A:R.101, A:D.133, A:T.134, A:T.135, A:N.194, A:R.226, A:R.226, A:S.263, A:K.266
- Water bridges: A:A.225, A:K.265, A:K.265
- Salt bridges: A:R.101, A:R.226, A:K.266, A:K.266, A:R.414
- pi-Stacking: A:F.459, A:F.459
9TD.4: 24 residues within 4Å:- Chain A: Y.72
- Chain B: F.37, L.49, T.50, D.51, S.52, Q.99, G.100, R.101, E.104, F.132, D.133, T.134, T.135, T.190, N.194, D.223, R.226, S.263, K.265, K.266, V.389, R.414, F.459
27 PLIP interactions:26 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:F.37, B:F.132, B:T.190, B:V.389, B:F.459, A:Y.72
- Hydrogen bonds: B:T.50, B:D.51, B:Q.99, B:G.100, B:R.101, B:D.133, B:N.194, B:R.226, B:R.226, B:S.263, B:S.263, B:K.266
- Water bridges: B:S.52, B:A.225, B:K.265
- Salt bridges: B:R.101, B:R.226, B:K.265, B:K.266, B:K.266, B:R.414
9TD.7: 24 residues within 4Å:- Chain C: F.37, L.49, T.50, D.51, S.52, Q.99, G.100, R.101, E.104, F.132, D.133, T.134, T.135, T.190, N.194, D.223, R.226, S.263, K.265, K.266, V.389, R.414, F.459
- Chain D: Y.72
28 PLIP interactions:26 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:F.37, C:F.132, C:F.132, C:T.190, C:V.389
- Hydrogen bonds: C:S.52, C:S.52, C:Q.99, C:G.100, C:R.101, C:R.101, C:D.133, C:T.135, C:N.194, C:R.226, C:R.226, C:S.263, C:K.266
- Water bridges: C:A.225, D:Y.301, D:Y.301
- Salt bridges: C:R.101, C:R.226, C:K.265, C:K.266, C:K.266, C:R.414
- pi-Stacking: C:F.459
9TD.8: 25 residues within 4Å:- Chain C: Y.72
- Chain D: F.37, T.50, D.51, S.52, Q.99, G.100, R.101, E.104, F.132, D.133, T.134, T.135, T.190, N.194, D.223, R.226, S.263, K.265, K.266, V.389, L.395, R.414, H.458, F.459
25 PLIP interactions:25 interactions with chain D- Hydrophobic interactions: D:F.37, D:F.132, D:T.190, D:V.389, D:L.395
- Hydrogen bonds: D:T.50, D:Q.99, D:G.100, D:R.101, D:D.133, D:T.135, D:N.194, D:R.226, D:R.226, D:S.263, D:K.266
- Water bridges: D:S.52, D:K.265
- Salt bridges: D:R.101, D:R.226, D:K.265, D:K.266, D:K.266, D:R.414
- pi-Stacking: D:F.459
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., The crystal structure of Proteus vulgaris tryptophan indole-lyase complexed with oxindolyl-L-alanine: implications for the reaction mechanism. Acta Crystallogr D Struct Biol (2018)
- Release Date
- 2018-06-06
- Peptides
- Tryptophanase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x 9TD: 1-carboxy-1-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]azaniumyl}-2-[(3R)-2-oxo-2,3-dihydro-1H-indol-3-yl]ethan-1-ide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., The crystal structure of Proteus vulgaris tryptophan indole-lyase complexed with oxindolyl-L-alanine: implications for the reaction mechanism. Acta Crystallogr D Struct Biol (2018)
- Release Date
- 2018-06-06
- Peptides
- Tryptophanase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D