SMTL ID : 5w75.1 (3 other biounits)

Crystal Structure of Reconstructed Bacterial Elongation Factor Node 168

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: H.12, V.13, D.14, H.15, G.16, K.17, S.18, T.19, Y.39, N.128, K.129, D.131, M.132, S.166, A.167, L.168 Ligands: MG.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:H.12, A:D.14, A:G.16, A:K.17, A:S.18, A:T.19, A:T.19, A:Y.39, A:N.128, A:K.129, A:K.129, A:S.166, A:A.167, A:L.168 Water bridges: A:K.17, A:S.18, A:S.18, A:T.19 Salt bridges: A:K.17, A:D.131

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.18, D.73 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.18, H2O.1, H2O.1, H2O.3, H2O.3

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: K.311, R.316, H.317, T.318 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.317, A:T.318 Salt bridges: A:K.311, A:R.316, A:H.317 SO4.4: 3 residues within 4Å: Chain A: R.227, F.259, N.271 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.271 Water bridges: A:N.271, A:N.271 Salt bridges: A:R.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okafor, C.D. et al., Structural and Dynamics Comparison of Thermostability in Ancient, Modern, and Consensus Elongation Factor Tus. Structure (2018)

Release Date

2018-04-25

Peptides

Elongation factor Tu: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elongation factor Tu

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