SMTL ID : 5w76.1

Crystal Structure of Reconstructed Bacterial Elongation Factor Node 168

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: K.17, T.18, D.73, C.74, P.75 Ligands: GDP.4 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.18, H2O.1, H2O.2, H2O.2, H2O.3

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: H.293, T.294, K.295, I.384, E.385 Ligands: PEG.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.294, A:T.294, A:K.295, A:I.384 Salt bridges: A:H.293

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 6 residues within 4Å: Chain A: V.27, E.30, K.31, E.178, E.179, M.182 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.31

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.4: 17 residues within 4Å: Chain A: H.12, V.13, D.14, H.15, G.16, K.17, T.18, T.19, Y.39, N.128, K.129, D.131, M.132, S.166, A.167, L.168 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:D.14, A:H.15, A:G.16, A:K.17, A:T.18, A:T.19, A:T.19, A:Y.39, A:N.128, A:K.129, A:K.129, A:S.166, A:S.166, A:A.167, A:L.168 Water bridges: A:K.17, A:T.18, A:T.19, A:Y.39, A:D.43, A:P.75, A:P.75 Salt bridges: A:K.17, A:D.131

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 6 residues within 4Å: Chain A: R.147, D.158, D.159, I.160, P.161, I.162 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.147, A:I.160 PEG.6: 8 residues within 4Å: Chain A: I.239, R.240, D.241, P.292, H.293, T.294, P.357 Ligands: SO4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okafor, C.D. et al., Structural and Dynamics Comparison of Thermostability in Ancient, Modern, and Consensus Elongation Factor Tus. Structure (2018)

Release Date

2018-04-25

Peptides

Ancestral Elogation Factor N153: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ancestral Elogation Factor N153