SMTL ID : 5w79.1

Crystal Structure of the Group II Chaperonin from Methanococcus Maripaludis, Cysteine-less mutant in the Apo State

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.12 Å

Oligo State

homo-octamer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: D.91, G.92, T.93, T.94, T.95 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.93, A:T.94, A:T.95, A:T.95 SO4.2: 5 residues within 4Å: Chain B: L.39, D.91, G.92, T.94, T.95 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.94, B:T.94, B:T.95 SO4.3: 5 residues within 4Å: Chain C: D.91, G.92, T.93, T.94, T.95 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.94, C:T.95, C:T.95 SO4.4: 4 residues within 4Å: Chain D: D.91, G.92, T.94, T.95 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:T.94, D:T.94, D:T.94, D:T.95 Water bridges: D:T.38, D:T.38 SO4.5: 5 residues within 4Å: Chain E: D.91, G.92, T.93, T.94, T.95 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:T.94, E:T.95, E:T.95 Water bridges: E:T.38, E:G.61 SO4.6: 5 residues within 4Å: Chain F: D.91, G.92, T.93, T.94, T.95 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:T.94, F:T.94, F:T.94, F:T.95, F:T.95 Water bridges: F:T.38, F:T.38 SO4.7: 4 residues within 4Å: Chain G: D.91, G.92, T.94, T.95 6 PLIP interactions: 6 interactions with chain G Hydrogen bonds: G:T.94, G:T.94, G:T.94, G:T.95 Water bridges: G:T.38, G:G.61 SO4.8: 5 residues within 4Å: Chain H: G.90, D.91, G.92, T.94, T.95 5 PLIP interactions: 5 interactions with chain H Hydrogen bonds: H:D.91, H:T.94, H:T.94, H:T.95, H:T.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalton, K.M. et al., The Conformational Cycle of the Group II Chaperonin Termini. To Be Published

Release Date

2018-06-20

Peptides

Chaperonin: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Chaperonin