SMTL ID : 5w7c.1 (1 other biounit)

Human acyloxyacyl hydrolase (AOAH), proteolytically processed, S263A mutant, with LPS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain B: C.54, N.55, S.57, D.58, Q.74 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain B: D.229, V.231, N.314, T.316, L.317, L.320 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.229

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.46 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.46 NAG.8: 2 residues within 4Å: Chain B: N.257, G.258 No protein-ligand interaction detected (PLIP)

3 x FTT: 3-HYDROXY-TETRADECANOIC ACID(Non-covalent)

FTT.4: 11 residues within 4Å: Chain A: N.24, H.26, T.27, G.30, C.31, V.34, V.35, V.73, F.77, I.81, F.100 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.34, A:V.34, A:F.100 Salt bridges: A:H.26 FTT.10: 17 residues within 4Å: Chain A: V.29, L.33 Chain B: A.111, F.116, I.118, N.188, G.189, H.281, L.295, L.299, V.304, P.306, V.374, D.375, H.378 Ligands: DAO.9, FTT.11 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.116, B:N.188 FTT.11: 14 residues within 4Å: Chain A: L.33, V.34, V.37, L.56, L.60 Chain B: F.116, I.118, W.122, I.123, F.133, L.136, L.140, L.144 Ligands: FTT.10 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.116

3 x CA: CALCIUM ION(Non-covalent)

CA.5: 7 residues within 4Å: Chain B: D.32, D.34, D.36, Y.38, D.53, D.56 Ligands: CA.6 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:D.32, B:D.34, B:D.36, B:Y.38, B:D.53, B:D.56 CA.6: 10 residues within 4Å: Chain B: D.34, D.36, D.53, N.55, D.56, D.58, E.59, V.61, Y.62 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.36, B:D.53, B:D.53, B:D.58, B:V.61 CA.7: 8 residues within 4Å: Chain B: D.71, D.75, S.76, N.77, N.79, I.81, W.82, E.93 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.71, B:D.75, B:I.81, B:E.93

1 x DAO: LAURIC ACID(Non-covalent)

DAO.9: 22 residues within 4Å: Chain B: D.110, A.111, A.112, N.188, G.189, I.219, G.220, N.221, C.224, P.267, G.269, F.271, L.272, P.306, C.307, W.310, F.351, I.371, F.377, H.378, P.379 Ligands: FTT.10 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.112, B:I.219, B:P.267, B:F.271, B:L.272, B:F.377, B:F.377

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorelik, A. et al., Crystal structure of the mammalian lipopolysaccharide detoxifier. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-01-03

Peptides

Acyloxyacyl hydrolase: A
Acyloxyacyl hydrolase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Acyloxyacyl hydrolase

Acyloxyacyl hydrolase

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