SMTL ID : 5w7z.1

Crystal structure of DNA polymerase III subunit beta from Rickettsia conorii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: D.59, L.60, Y.61, L.245, K.247 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.60 Water bridges: A:K.233, A:K.233 EDO.2: 5 residues within 4Å: Chain A: V.364, S.365, P.384, V.385, K.386 5 PLIP interactions: 5 interactions with chain A Water bridges: A:V.364, A:P.384, A:V.385, A:V.385, A:V.387 EDO.4: 7 residues within 4Å: Chain B: D.59, L.60, Y.61, D.128, K.233, L.245, K.247 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.60

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 7 residues within 4Å: Chain A: T.180, G.182, H.183, R.184, L.185, F.259, V.381 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.185, A:F.259, A:F.259, A:F.259, A:V.381 Hydrogen bonds: A:G.182, A:G.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bowatte, K. et al., Crystal structure of DNA polymerase III subunit beta from Rickettsia conorii. to be published

Release Date

2017-07-26

Peptides

DNA polymerase III subunit beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA polymerase III subunit beta

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