SMTL ID : 5wbg.6 (5 other biounits)

Crystal Structure of human Cytochrome P450 2B6 (Y226H/K262R) in complex with an analog of a drug Efavirenz

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 22 residues within 4Å: Chain A: R.79, I.95, W.102, R.106, L.276, A.279, G.280, T.283, T.284, Q.338, V.348, H.350, L.373, P.409, F.410, S.411, R.415, C.417, L.418, G.419, A.423 Ligands: 9ZJ.3 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:I.95, A:L.276, A:A.279, A:V.348, A:L.373, A:F.410, A:L.418, A:L.418 Hydrogen bonds: A:S.411, A:S.411 Salt bridges: A:R.79, A:R.79, A:R.106, A:H.350, A:R.415 Metal complexes: A:C.417

1 x CM5: 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE(Non-covalent)

CM5.2: 5 residues within 4Å: Chain A: L.20, L.21, P.53, F.201, F.204 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.21, A:F.201, A:F.201, A:F.204, A:F.204

1 x 9ZJ: (2R,4S)-6-chloro-4-(cyclopropylethynyl)-2-methyl-4-(trifluoromethyl)-1,4-dihydro-2H-3,1-benzoxazine(Non-covalent)

9ZJ.3: 13 residues within 4Å: Chain A: I.82, F.89, I.95, F.96, F.187, S.275, F.278, A.279, E.282, T.283, V.348, V.458 Ligands: HEM.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.95, A:F.187, A:F.187, A:F.278, A:F.278, A:A.279, A:E.282, A:T.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shah, M.B. et al., Crystal Structure of CYP2B6 in Complex with an Efavirenz Analog. Int J Mol Sci (2018)

Release Date

2018-05-02

Peptides

Cytochrome P450 2B6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Cytochrome P450 2B6

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