SMTL ID : 5wbv.1 (1 other biounit)

Crystal Structure of the SET Domain of Human SUV420H1 In Complex With Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.213, C.257, C.259, C.262 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.213, A:C.257, A:C.259, A:C.262

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.2: 18 residues within 4Å: Chain A: H.36, Y.141, S.143, E.144, G.147, A.148, F.188, S.189, A.207, F.208, I.209, N.210, H.211, Y.245, F.250, C.257, E.258, C.259 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.143, A:E.144, A:A.148, A:A.148, A:N.210, A:H.211, A:H.211, A:Y.245, A:E.258 Water bridges: A:H.36 Salt bridges: A:H.36 pi-Stacking: A:Y.141, A:Y.141, A:F.250

1 x 9ZY: 2-chloro-5-(4-methyl-6-oxo-3-phenylpyrano[2,3-c]pyrazol-1(6H)-yl)benzoic acid(Non-covalent)

9ZY.3: 12 residues within 4Å: Chain A: G.167, F.188, S.189, V.190, M.191, W.202, A.206, A.207, F.219, A.227, Y.245, F.249 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:M.191, A:W.202, A:W.202, A:A.206, A:F.219, A:F.219, A:A.227, A:Y.245, A:Y.245, A:F.249 pi-Stacking: A:W.202, A:F.219, A:F.219

6 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 1 residues within 4Å: Chain A: K.196 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: W.156, K.161, E.163 No protein-ligand interaction detected (PLIP) UNX.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Chain A: G.184 No protein-ligand interaction detected (PLIP) UNX.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halabelian, L. et al., Crystal Structure of the SET Domain of Human SUV420H1 In Complex With Inhibitor. To be published

Release Date

2017-07-19

Peptides

Histone-lysine N-methyltransferase KMT5B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase KMT5B

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