- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.09 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 8 x CD: CADMIUM ION(Non-covalent)
CD.2: 1 residues within 4Å:- Chain A: E.11
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.11, A:E.11, H2O.15
CD.3: 2 residues within 4Å:- Chain A: H.531, E.548
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.531, A:E.548, A:E.548, H2O.17
CD.4: 2 residues within 4Å:- Chain A: D.543, D.547
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.543, A:D.547, A:D.547
CD.5: 5 residues within 4Å:- Chain A: C.112, Y.114, C.128, L.248, H.253
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:C.112, A:C.128, H2O.10, H2O.18
CD.17: 1 residues within 4Å:- Chain B: E.11
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.11, B:E.11, H2O.33
CD.18: 2 residues within 4Å:- Chain B: H.531, E.548
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.531, B:E.548, B:E.548, H2O.35
CD.19: 2 residues within 4Å:- Chain B: D.543, D.547
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.543, B:D.547, B:D.547
CD.20: 5 residues within 4Å:- Chain B: C.112, Y.114, C.128, L.248, H.253
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:C.112, B:C.128, H2O.28, H2O.36
- 2 x ZN: ZINC ION(Non-covalent)
ZN.6: 4 residues within 4Å:- Chain A: C.597, C.600, C.613, C.616
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.597, A:C.600, A:C.613, A:C.616
ZN.21: 4 residues within 4Å:- Chain B: C.597, C.600, C.613, C.616
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.597, B:C.600, B:C.613, B:C.616
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 4 residues within 4Å:- Chain A: N.229, Y.330, K.345, K.380
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.229
- Water bridges: A:N.326
- Salt bridges: A:K.345, A:K.380
SO4.8: 3 residues within 4Å:- Chain A: P.238, K.239, D.240
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.239, A:D.240
- Water bridges: A:D.240, A:K.243
SO4.9: 2 residues within 4Å:- Chain A: R.220, R.222
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.220, A:R.222
SO4.10: 6 residues within 4Å:- Chain A: P.301, S.302, E.305, K.612, C.616, G.617
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.302
- Water bridges: A:G.617
- Salt bridges: A:K.612
SO4.11: 2 residues within 4Å:- Chain A: R.209, R.379
5 PLIP interactions:5 interactions with chain A- Water bridges: A:R.379, A:R.379, A:K.380
- Salt bridges: A:R.209, A:R.379
SO4.12: 4 residues within 4Å:- Chain A: T.30, P.35, D.36, E.37
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.36, A:E.37, A:E.37
SO4.22: 4 residues within 4Å:- Chain B: N.229, Y.330, K.345, K.380
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.229
- Water bridges: B:N.326, B:Y.330
- Salt bridges: B:K.345, B:K.380
SO4.23: 3 residues within 4Å:- Chain B: P.238, K.239, D.240
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.239, B:D.240
- Water bridges: B:D.240, B:K.243
SO4.24: 2 residues within 4Å:- Chain B: R.220, R.222
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.220, B:R.222
SO4.25: 6 residues within 4Å:- Chain B: P.301, S.302, E.305, K.612, C.616, G.617
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.302
- Water bridges: B:G.617
- Salt bridges: B:K.612
SO4.26: 2 residues within 4Å:- Chain B: R.209, R.379
5 PLIP interactions:5 interactions with chain B- Water bridges: B:R.379, B:R.379, B:K.380
- Salt bridges: B:R.209, B:R.379
SO4.27: 4 residues within 4Å:- Chain B: T.30, P.35, D.36, E.37
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.36, B:E.37, B:E.37
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x MB5: (5aS,12aS,13aS)-9-chloro-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one(Non-covalent)
MB5.14: 15 residues within 4Å:- Chain A: P.85, V.130, G.131, A.132, P.133, V.136, L.137, F.489, I.493, E.494, W.514, L.568, I.573, L.641, W.645
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:P.85, A:V.136, A:L.137, A:F.489, A:I.493, A:I.493, A:I.573, A:L.641
- Hydrogen bonds: A:G.131, A:E.494
MB5.15: 10 residues within 4Å:- Chain A: W.421, H.507, I.510
- Chain B: G.179, G.433, K.434, S.435, A.436, P.437, A.438
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:G.433
- Hydrophobic interactions: A:H.507
- pi-Stacking: A:H.507, A:H.507
MB5.29: 15 residues within 4Å:- Chain B: P.85, V.130, G.131, A.132, P.133, V.136, L.137, F.489, I.493, E.494, W.514, L.568, I.573, L.641, W.645
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:P.85, B:V.136, B:L.137, B:F.489, B:I.493, B:I.493, B:I.573, B:L.641
- Hydrogen bonds: B:G.131, B:E.494
MB5.30: 10 residues within 4Å:- Chain A: G.179, G.433, K.434, S.435, A.436, P.437, A.438
- Chain B: W.421, H.507, I.510
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:H.507
- pi-Stacking: B:H.507, B:H.507
- Hydrogen bonds: A:G.433
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fraley, A.E. et al., Function and Structure of MalA/MalA', Iterative Halogenases for Late-Stage C-H Functionalization of Indole Alkaloids. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-08-16
- Peptides
- Flavin-dependent halogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.09 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 8 x CD: CADMIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x MB5: (5aS,12aS,13aS)-9-chloro-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fraley, A.E. et al., Function and Structure of MalA/MalA', Iterative Halogenases for Late-Stage C-H Functionalization of Indole Alkaloids. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-08-16
- Peptides
- Flavin-dependent halogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A