SMTL ID : 5wje.1

Crystal structure of Naa80 bound to a bisubstrate analogue

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x ASP- ASP- ASP- ILE- NH2: Actin N-terminus peptide(Non-covalent)

ASP-ASP-ASP-ILE-NH2.1: 13 residues within 4Å: Chain A: W.27, R.29, A.33, R.34, S.37, K.64, E.78, S.79, S.115, T.116, I.117, K.152 Ligands: CMC.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:W.27, A:A.33, A:K.64, A:E.78 Hydrogen bonds: A:R.29, A:R.34, A:S.37, A:S.79, A:S.79, A:S.79, A:S.79, A:S.79, A:S.115, A:I.117 Water bridges: A:W.27, A:R.29, A:S.115, A:Y.137 Salt bridges: A:R.34, A:K.64, A:K.152

1 x CMC: CARBOXYMETHYL COENZYME *A(Non-covalent)

CMC.2: 23 residues within 4Å: Chain A: E.26, W.27, E.78, S.79, V.80, V.81, V.82, R.87, G.88, Q.89, G.90, F.91, G.92, K.93, S.115, T.116, Q.119, G.121, F.122, Y.123, R.125 Ligands: ASP-ASP-ASP-ILE-NH2.1, ASP-ASP-ASP-ILE-NH2.1 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:E.26, A:V.80, A:Q.119 Hydrogen bonds: A:S.79, A:V.80, A:V.80, A:V.82, A:G.88, A:G.90, A:F.91, A:G.92, A:K.93, A:Q.119, A:Q.119, A:F.122 Water bridges: A:G.88, A:Q.89, A:Q.89, A:G.121, A:G.121 Salt bridges: A:R.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goris, M. et al., Structural determinants and cellular environment define processed actin as the sole substrate of the N-terminal acetyltransferase NAA80. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-03-28

Peptides

CG8481, isoform B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CG8481, isoform B

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