SMTL ID : 5wro.1

Crystal structure of Drosophila enolase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

4 x CD: CADMIUM ION(Non-covalent)

CD.1: 1 residues within 4Å: Chain A: G.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:G.1 CD.2: 5 residues within 4Å: Chain A: D.251, E.300, D.325, K.401 Ligands: CL.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.251, A:E.300, A:D.325, H2O.1, H2O.1 CD.9: 1 residues within 4Å: Chain B: G.1 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:G.1 CD.10: 5 residues within 4Å: Chain B: D.251, E.300, D.325, K.401 Ligands: CL.12 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.251, B:E.300, B:D.325, H2O.14, H2O.14

2 x CO: COBALT (II) ION(Non-covalent)

CO.3: 2 residues within 4Å: Chain A: N.160, H.164 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.164, H2O.1 CO.11: 2 residues within 4Å: Chain B: N.160, H.164 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.164, H2O.14

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 7 residues within 4Å: Chain A: D.251, E.300, D.325, K.350, K.401 Ligands: CD.2, SO4.6 Ligand excluded by PLIP CL.12: 7 residues within 4Å: Chain B: D.251, E.300, D.325, K.350, K.401 Ligands: CD.10, SO4.14 Ligand excluded by PLIP

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: S.225, N.226, K.227, L.286, F.290 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.226, A:N.226, A:K.227 Water bridges: A:L.265 SO4.6: 6 residues within 4Å: Chain A: G.44, A.45, K.350, R.379, S.380 Ligands: CL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.45, A:S.380 Salt bridges: A:K.350, A:R.379 SO4.13: 5 residues within 4Å: Chain B: S.225, N.226, K.227, L.286, F.290 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.226, B:N.226, B:K.227 Water bridges: B:L.265 SO4.14: 6 residues within 4Å: Chain B: G.44, A.45, K.350, R.379, S.380 Ligands: CL.12 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.45, B:S.380 Salt bridges: B:K.350, B:R.379

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: Y.137, Q.416, R.419, I.420, E.423 Chain B: R.38 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.38, B:R.38, A:Q.416 Water bridges: A:R.419 GOL.8: 5 residues within 4Å: Chain A: R.21, N.23, K.66 Chain B: H.196, K.199 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.21, A:N.23, B:H.196, B:K.199 Water bridges: A:R.21, B:H.196 GOL.15: 6 residues within 4Å: Chain A: R.38 Chain B: Y.137, Q.416, R.419, I.420, E.423 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.416, A:R.38, A:R.38 Water bridges: B:R.419 GOL.16: 5 residues within 4Å: Chain A: H.196, K.199 Chain B: R.21, N.23, K.66 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:H.196, A:K.199, B:R.21, B:N.23 Water bridges: A:H.196, B:R.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, C. et al., Crystal structure of enolase from Drosophila melanogaster. Acta Crystallogr F Struct Biol Commun (2017)

Release Date

2017-04-26

Peptides

Enolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Enolase