SMTL ID : 5wti.1

Crystal structure of the CRISPR-associated protein in complex with crRNA and DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

monomer

Ligands

26 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Chain B: G.5 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain C: E.789, K.793 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.789 MG.4: 3 residues within 4Å: Chain C: D.574, L.575, E.828 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.574, C:L.575, C:E.828 MG.5: 3 residues within 4Å: Chain C: Q.453, D.470 Chain D: C.104 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.470 MG.6: 2 residues within 4Å: Chain C: K.199, I.201 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:I.201 MG.7: 1 residues within 4Å: Chain C: R.208 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Chain D: U.99 No protein-ligand interaction detected (PLIP) MG.9: 3 residues within 4Å: Chain D: U.82, G.83, U.84 No protein-ligand interaction detected (PLIP) MG.10: 3 residues within 4Å: Chain D: U.98, U.99 Ligands: MG.11 No protein-ligand interaction detected (PLIP) MG.11: 2 residues within 4Å: Chain D: U.99 Ligands: MG.10 No protein-ligand interaction detected (PLIP) MG.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.13: 2 residues within 4Å: Chain D: G.6, G.101 No protein-ligand interaction detected (PLIP) MG.14: 2 residues within 4Å: Chain D: G.53, U.66 No protein-ligand interaction detected (PLIP) MG.15: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.16: 1 residues within 4Å: Chain D: U.13 No protein-ligand interaction detected (PLIP) MG.17: 2 residues within 4Å: Chain D: U.39, A.40 No protein-ligand interaction detected (PLIP) MG.18: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.19: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.20: 2 residues within 4Å: Chain D: U.45 Ligands: MG.26 No protein-ligand interaction detected (PLIP) MG.21: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.22: 1 residues within 4Å: Chain D: U.99 No protein-ligand interaction detected (PLIP) MG.23: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.24: 1 residues within 4Å: Chain D: G.1 No protein-ligand interaction detected (PLIP) MG.25: 1 residues within 4Å: Chain D: G.1 No protein-ligand interaction detected (PLIP) MG.26: 4 residues within 4Å: Chain D: G.44, U.45, U.75 Ligands: MG.20 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, D. et al., Structural basis of stringent PAM recognition by CRISPR-C2c1 in complex with sgRNA. Cell Res. (2017)

Release Date

2017-11-01

Peptides

CRISPR-associated protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
Z

CRISPR-associated protein