- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 15 x FE2: FE (II) ION(Non-covalent)(Non-functional Binders)
FE2.2: 1 residues within 4Å:- Chain F: D.138
No protein-ligand interaction detected (PLIP)FE2.6: 1 residues within 4Å:- Ligands: FE2.7
No protein-ligand interaction detected (PLIP)FE2.7: 6 residues within 4Å:- Chain B: D.138
- Chain I: D.138, H.141
- Chain K: D.138, H.141
- Ligands: FE2.6
3 PLIP interactions:1 interactions with chain K, 1 interactions with chain I, 1 interactions with chain B- Metal complexes: K:D.138, I:D.138, B:D.138
FE2.11: 2 residues within 4Å:- Ligands: FE2.24, FE2.37
No protein-ligand interaction detected (PLIP)FE2.12: 2 residues within 4Å:- Ligands: FE2.25, FE2.38
No protein-ligand interaction detected (PLIP)FE2.15: 1 residues within 4Å:- Chain J: D.138
No protein-ligand interaction detected (PLIP)FE2.19: 1 residues within 4Å:- Ligands: FE2.20
No protein-ligand interaction detected (PLIP)FE2.20: 6 residues within 4Å:- Chain A: D.138, H.141
- Chain C: D.138, H.141
- Chain F: D.138
- Ligands: FE2.19
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain F- Metal complexes: A:D.138, C:D.138, F:D.138
FE2.24: 2 residues within 4Å:- Ligands: FE2.11, FE2.37
No protein-ligand interaction detected (PLIP)FE2.25: 2 residues within 4Å:- Ligands: FE2.12, FE2.38
No protein-ligand interaction detected (PLIP)FE2.28: 1 residues within 4Å:- Chain B: D.138
No protein-ligand interaction detected (PLIP)FE2.32: 1 residues within 4Å:- Ligands: FE2.33
No protein-ligand interaction detected (PLIP)FE2.33: 6 residues within 4Å:- Chain E: D.138, H.141
- Chain G: D.138, H.141
- Chain J: D.138
- Ligands: FE2.32
3 PLIP interactions:1 interactions with chain E, 1 interactions with chain G, 1 interactions with chain J- Metal complexes: E:D.138, G:D.138, J:D.138
FE2.37: 2 residues within 4Å:- Ligands: FE2.11, FE2.24
No protein-ligand interaction detected (PLIP)FE2.38: 2 residues within 4Å:- Ligands: FE2.12, FE2.25
No protein-ligand interaction detected (PLIP)- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 8 residues within 4Å:- Chain A: N.48, D.51
- Chain E: N.48, D.51
- Chain I: N.48, D.51
- Ligands: MG.16, MG.29
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain E, 1 interactions with chain I- Metal complexes: A:D.51, E:D.51, I:D.51
MG.13: 6 residues within 4Å:- Chain D: N.48, D.51
- Chain F: N.48, D.51
- Chain G: N.48, D.51
3 PLIP interactions:1 interactions with chain F, 1 interactions with chain D, 1 interactions with chain G- Metal complexes: F:D.51, D:D.51, G:D.51
MG.16: 8 residues within 4Å:- Chain A: N.48, D.51
- Chain E: N.48, D.51
- Chain I: N.48, D.51
- Ligands: MG.3, MG.29
3 PLIP interactions:1 interactions with chain I, 1 interactions with chain A, 1 interactions with chain E- Metal complexes: I:D.51, A:D.51, E:D.51
MG.26: 6 residues within 4Å:- Chain H: N.48, D.51
- Chain J: N.48, D.51
- Chain K: N.48, D.51
3 PLIP interactions:1 interactions with chain J, 1 interactions with chain H, 1 interactions with chain K- Metal complexes: J:D.51, H:D.51, K:D.51
MG.29: 8 residues within 4Å:- Chain A: N.48, D.51
- Chain E: N.48, D.51
- Chain I: N.48, D.51
- Ligands: MG.3, MG.16
3 PLIP interactions:1 interactions with chain I, 1 interactions with chain A, 1 interactions with chain E- Metal complexes: I:D.51, A:D.51, E:D.51
MG.39: 6 residues within 4Å:- Chain B: N.48, D.51
- Chain C: N.48, D.51
- Chain L: N.48, D.51
3 PLIP interactions:1 interactions with chain L, 1 interactions with chain B, 1 interactions with chain C- Metal complexes: L:D.51, B:D.51, C:D.51
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 8 residues within 4Å:- Chain A: R.50, L.54
- Chain E: R.50, L.54
- Chain I: R.50, L.54
- Ligands: CL.17, CL.30
Ligand excluded by PLIPCL.8: 6 residues within 4Å:- Chain B: R.50, L.54
- Chain C: R.50, L.54
- Chain L: R.50, L.54
Ligand excluded by PLIPCL.17: 8 residues within 4Å:- Chain A: R.50, L.54
- Chain E: R.50, L.54
- Chain I: R.50, L.54
- Ligands: CL.4, CL.30
Ligand excluded by PLIPCL.21: 6 residues within 4Å:- Chain D: R.50, L.54
- Chain F: R.50, L.54
- Chain G: R.50, L.54
Ligand excluded by PLIPCL.30: 8 residues within 4Å:- Chain A: R.50, L.54
- Chain E: R.50, L.54
- Chain I: R.50, L.54
- Ligands: CL.4, CL.17
Ligand excluded by PLIPCL.34: 6 residues within 4Å:- Chain H: R.50, L.54
- Chain J: R.50, L.54
- Chain K: R.50, L.54
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Williams, S.M. et al., Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis. Metallomics (2017)
- Release Date
- 2017-08-09
- Peptides
- Putative starvation-induced DNA protecting protein/Ferritin and Dps: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 15 x FE2: FE (II) ION(Non-covalent)(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Williams, S.M. et al., Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis. Metallomics (2017)
- Release Date
- 2017-08-09
- Peptides
- Putative starvation-induced DNA protecting protein/Ferritin and Dps: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D