SMTL ID : 5x1i.1 (1 other biounit)

Vanillate/3-O-methylgallate O-demethylase, LigM, substrate free form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: G.292, G.293, N.374, Y.375, A.376, N.379, D.381 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.375, A:A.376, A:A.380, A:D.381 EDO.2: 6 residues within 4Å: Chain A: Y.103, H.105, T.269, G.270, E.301, Y.304 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.301 Water bridges: A:H.105, A:A.266 EDO.3: 7 residues within 4Å: Chain B: G.292, G.293, N.374, Y.375, A.376, N.379, D.381 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.375, B:A.376, B:A.380, B:D.381 EDO.4: 6 residues within 4Å: Chain B: Y.103, H.105, T.269, G.270, E.301, Y.304 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.301 Water bridges: B:H.105, B:A.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harada, A. et al., The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6. FEBS J. (2017)

Release Date

2017-05-17

Peptides

Vanillate/3-O-methylgallate O-demethylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Vanillate/3-O-methylgallate O-demethylase

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