SMTL ID : 5x3v.1

Structure of human SHMT2 protein mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.374, T.399, A.442, K.443, L.444 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.444 Salt bridges: A:R.374, A:K.443 SO4.2: 3 residues within 4Å: Chain A: R.209, G.354, D.357 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.357 Salt bridges: A:R.209 SO4.3: 9 residues within 4Å: Chain A: S.121, G.122, S.123, T.256, H.258, R.265 Chain B: Y.120, G.304, G.305 11 PLIP interactions: 8 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.121, A:S.121, A:G.122, A:S.123, A:R.265, B:G.304, B:G.305 Water bridges: A:H.258, A:K.259, B:Y.120 Salt bridges: A:H.258 SO4.4: 8 residues within 4Å: Chain A: Y.120, G.304, G.305 Chain B: S.121, G.122, S.123, T.256, H.258 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.121, B:G.122, B:S.123, B:S.123, A:G.304, A:G.305 Water bridges: B:R.265, A:Y.120 Salt bridges: B:H.258 SO4.5: 2 residues within 4Å: Chain B: R.41, R.48 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.41, B:R.48 SO4.6: 4 residues within 4Å: Chain B: R.374, A.442, K.443, L.444 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.444 Salt bridges: B:R.374

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Structure of human SHMT2 protein mutant. To Be Published

Release Date

2018-02-14

Peptides

Serine hydroxymethyltransferase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine hydroxymethyltransferase, mitochondrial