SMTL ID : 5x6k.1 (1 other biounit)

Crystal structure of adenylate kinase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.1: 31 residues within 4Å: Chain A: G.18, P.19, G.20, S.21, G.22, K.23, G.24, T.25, S.41, G.42, L.45, R.46, M.63, E.67, L.68, V.69, V.74, G.96, Y.97, R.99, Q.103, R.130, L.131, R.134, R.140, D.142, R.151, S.177, L.179, P.180, V.181 41 PLIP interactions: 41 interactions with chain A Hydrogen bonds: A:G.20, A:S.21, A:G.22, A:K.23, A:G.24, A:T.25, A:T.25, A:S.41, A:E.67, A:V.69, A:R.99, A:Q.103, A:Q.103, A:R.151, A:L.179 Water bridges: A:T.25, A:S.40, A:G.42, A:G.42, A:R.46, A:R.99, A:R.130, A:R.130, A:R.130, A:R.134, A:R.151, A:V.181 Salt bridges: A:K.23, A:K.23, A:K.23, A:R.46, A:R.99, A:R.99, A:R.134, A:R.134, A:R.140, A:R.140, A:R.140, A:R.151 pi-Cation interactions: A:R.130, A:R.130

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.55, D.76, D.80 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.80 Water bridges: A:R.55 Salt bridges: A:R.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moon, S. et al., Structural analyses of adenylate kinases from Antarctic and tropical fishes for understanding cold adaptation of enzymes. Sci Rep (2017)

Release Date

2018-02-28

Peptides

adenylate kinase isoenzyme 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

adenylate kinase isoenzyme 1

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