SMTL ID : 5x6x.2 (1 other biounit)

Crystal structure of the capping enzyme P5 from Rice Dwarf Virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: Q.619, D.620, I.621, S.624, L.746, F.747, F.748, D.749, N.750 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.620, A:S.624, A:F.747, A:D.749, A:N.750 EDO.2: 6 residues within 4Å: Chain A: F.197, V.202, K.206, I.208, R.484, A.485 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.485, A:A.485 Water bridges: A:S.210 EDO.3: 7 residues within 4Å: Chain A: W.398, N.399, R.400, R.422, M.424, T.443, M.447 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.398, A:R.400, A:T.443

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamichi, Y. et al., Crystal structure of the capping enzyme P5 from Rice Dwarf Virus. To Be Published

Release Date

2018-02-28

Peptides

mRNA capping enzyme P5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

mRNA capping enzyme P5

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