SMTL ID : 5xa3.1 (3 other biounits)

Crystal Structure of P450BM3 with Benzyloxycarbonyl-L-prolyl-L-phenylalanine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: K.70, L.87, F.88, W.97, F.108, I.154, F.262, A.265, T.269, T.270, L.273, T.328, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: DMS.2, PHQ.5 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:L.87, A:F.88, A:F.108, A:I.154, A:F.262, A:A.265, A:L.273, A:F.394, A:I.402 Hydrogen bonds: A:R.399 Water bridges: A:K.70, A:K.70, A:H.101, A:S.333 Salt bridges: A:K.70, A:R.399 Metal complexes: A:C.401

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: F.88, A.265, T.269, A.329 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.88

1 x PRO: PROLINE(Non-covalent)

PRO.3: 8 residues within 4Å: Chain A: P.26, V.27, L.30, Y.52, L.189, M.355 Ligands: PHE.4, PHQ.5 4 PLIP interactions: 1 Ligand-Ligand interactions, 3 interactions with chain A Hydrogen bonds: F.4 Hydrophobic interactions: A:P.26, A:V.27, A:L.30

1 x PHE: PHENYLALANINE(Non-covalent)

PHE.4: 10 residues within 4Å: Chain A: L.21, F.43, R.48, Y.52, S.73, Q.74, A.75, L.189 Ligands: PRO.3, PHQ.5 7 PLIP interactions: 4 interactions with chain A, 3 Ligand-Ligand interactions Hydrophobic interactions: A:L.21, A:F.43 Hydrogen bonds: A:Q.74, A:A.75, F.4, F.4, F.4

1 x PHQ: benzyl chlorocarbonate(Non-covalent)

PHQ.5: 10 residues within 4Å: Chain A: S.73, A.75, L.76, F.88, A.331, F.332, L.438 Ligands: HEM.1, PRO.3, PHE.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.76, A:L.76, A:F.88, A:L.438

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shoji, O. et al., Direct Hydroxylation of Benzene to Phenol by Cytochrome P450BM3 Triggered by Amino Acid Derivatives. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2018-02-21

Peptides

Bifunctional cytochrome P450/NADPH-P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional cytochrome P450/NADPH-P450 reductase

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