SMTL ID : 5xbz.1 (1 other biounit)

Crystal structure of GH family 81 beta-1,3-glucanase from Rhizomucr miehei complexed with laminaripentaose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-BGC.1: 21 residues within 4Å: Chain A: Y.411, F.412, K.415, F.493, S.499, D.500, Y.503, H.504, A.563, G.564, K.567, D.576, E.578, E.582, Y.653, F.654, Y.660, W.702 Ligands: BGC-BGC-BGC-BGC.2, BGC-BGC-BGC-BGC.2, BGC-BGC-BGC-BGC.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.702

1 x BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose

BGC-BGC-BGC-BGC.2: 15 residues within 4Å: Chain A: L.572, D.573, I.642, K.647, D.649, T.651, T.652, Y.653, F.654, G.655, R.656 Ligands: BGC-BGC-BGC-BGC-BGC.1, BGC-BGC-BGC.3, BGC-BGC-BGC.3, BGC-BGC-BGC.3 No protein-ligand interaction detected (PLIP)

1 x BGC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose

BGC-BGC-BGC.3: 8 residues within 4Å: Chain A: Y.118, D.573, K.647, D.649, T.651 Ligands: BGC-BGC-BGC-BGC.2, BGC-BGC-BGC-BGC.2, BGC-BGC-BGC-BGC.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.651, A:T.651

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, S. et al., Catalytic mechanism of glycoside hydrolase family 81 beta-1,3-glucanase. To Be Published

Release Date

2018-03-28

Peptides

Endo-beta-1,3-glucanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-beta-1,3-glucanase

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