SMTL ID : 5xdr.1

Crystal structure of human DEAH-box RNA helicase DHX15 in complex with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: L.32, E.56, T.57, G.58, S.59, G.60, K.61, T.62, T.63, S.95, R.99, F.296, T.324, D.326, R.370 Ligands: MG.4 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.58, A:G.58, A:S.59, A:G.60, A:K.61, A:T.62, A:T.62, A:T.63, A:S.95, A:R.99, A:D.326, A:R.370 Water bridges: A:K.61, A:K.61, A:T.62, A:T.62, A:T.62, A:E.156, A:T.321 Salt bridges: A:K.61 pi-Stacking: A:F.296

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.497, K.502 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.497, A:K.502 SO4.3: 4 residues within 4Å: Chain A: I.582, K.586, K.649, W.652 3 PLIP interactions: 3 interactions with chain A Water bridges: A:W.652 Salt bridges: A:K.586, A:K.649

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: T.62, D.155, E.156 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.62, H2O.1, H2O.1, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murakami, K. et al., The crystal structure of human DEAH-box RNA helicase 15 reveals a domain organization of the mammalian DEAH/RHA family. Acta Crystallogr F Struct Biol Commun (2017)

Release Date

2017-06-21

Peptides

Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15