SMTL ID : 5xia.1

STRUCTURES OF D-XYLOSE ISOMERASE FROM ARTHROBACTER STRAIN B3728 CONTAINING THE INHIBITORS XYLITOL AND D-SORBITOL AT 2.5 ANGSTROMS AND 2.3 ANGSTROMS RESOLUTION, RESPECTIVELY

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x XYL: Xylitol(Non-covalent)

XYL.1: 12 residues within 4Å: Chain A: W.14, H.52, F.92, W.135, E.179, K.181, E.215, H.218, D.243, D.291 Chain D: F.24 Ligands: MG.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:H.52, A:E.179, A:H.218, A:D.253, A:D.253 Water bridges: A:W.14, A:N.213, A:D.291, A:D.291 XYL.3: 11 residues within 4Å: Chain B: W.14, H.52, W.135, E.179, K.181, E.215, H.218, D.243, D.291 Chain C: F.24 Ligands: MG.4 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:H.52, B:E.179, B:H.218, B:D.253, B:D.253 Water bridges: B:W.14, B:N.213, B:E.215, B:D.291 XYL.5: 12 residues within 4Å: Chain B: F.24 Chain C: W.14, H.52, F.92, W.135, E.179, K.181, E.215, H.218, D.243, D.291 Ligands: MG.6 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:H.52, C:E.179, C:H.218, C:D.253 Water bridges: C:W.14, C:T.88, C:N.213, C:D.291, C:D.291 XYL.7: 11 residues within 4Å: Chain A: F.24 Chain D: W.14, H.52, W.135, E.179, K.181, E.215, H.218, D.243, D.291 Ligands: MG.8 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:H.52, D:E.179, D:H.218, D:D.253 Water bridges: D:W.14, D:T.88, D:N.213, D:E.215, D:D.291

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: E.179, E.215, D.243, D.291 Ligands: XYL.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.179, A:E.215, A:D.243, A:D.291 MG.4: 5 residues within 4Å: Chain B: E.179, E.215, D.243, D.291 Ligands: XYL.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.179, B:E.215, B:D.243, B:D.291 MG.6: 5 residues within 4Å: Chain C: E.179, E.215, D.243, D.291 Ligands: XYL.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.179, C:E.215, C:D.243, C:D.291 MG.8: 5 residues within 4Å: Chain D: E.179, E.215, D.243, D.291 Ligands: XYL.7 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.179, D:E.215, D:D.243, D:D.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Henrick, K. et al., Structures of D-xylose isomerase from Arthrobacter strain B3728 containing the inhibitors xylitol and D-sorbitol at 2.5 A and 2.3 A resolution, respectively. J.Mol.Biol. (1989)

Release Date

1990-04-15

Peptides

D-XYLOSE ISOMERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

D-XYLOSE ISOMERASE

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