SMTL ID : 5xp8.1

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 4A5 on the guide strand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x DA- DG- DT: DNA (5'-D(*AP*GP*T)-3')(Non-covalent)

DA-DG-DT.1: 12 residues within 4Å: Chain A: N.195, Y.197, W.202, L.217, P.218, L.223, Y.226, H.227, R.232, I.254, P.255, H.256 Protein-ligand interaction information (PLIP) not available

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.478, D.660, K.664 Chain C: T.10, A.11 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.478, A:D.660, A:D.660 MG.3: 4 residues within 4Å: Chain A: R.661, V.685 Chain B: T.1, A.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.685 MG.4: 5 residues within 4Å: Chain A: D.478, E.512, D.546 Chain C: C.9, T.10 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.478, A:D.546

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheng, G. et al., Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes. Nucleic Acids Res. (2017)

Release Date

2018-04-18

Peptides

TtAgo: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TtAgo

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