SMTL ID : 5xpg.1

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 6'U7' on the target strand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: W.283, R.587, L.588, H.607 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.588 Salt bridges: A:H.607 SO4.2: 2 residues within 4Å: Chain A: R.350, P.358 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.350

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: V.685 Chain B: T.1, A.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.685

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheng, G. et al., Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes. Nucleic Acids Res. (2017)

Release Date

2018-04-18

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein

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