SMTL ID : 5xtm.1 (1 other biounit)

Crystal structure of PhoRpp38 bound to a K-turn in P12.2 helix

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

13 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: E.86 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.86, H2O.2 MG.2: 1 residues within 4Å: Chain B: G.23 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain B: C.47 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: G.7, A.22, G.23 No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain B: A.43, A.44, G.45, C.46 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain B: A.13 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Chain B: G.8 No protein-ligand interaction detected (PLIP) MG.9: 1 residues within 4Å: Chain B: A.14 No protein-ligand interaction detected (PLIP) MG.10: 2 residues within 4Å: Chain B: G.1, G.2 No protein-ligand interaction detected (PLIP) MG.11: 1 residues within 4Å: Chain B: U.42 No protein-ligand interaction detected (PLIP) MG.12: 2 residues within 4Å: Chain B: G.1 Ligands: MG.13 No protein-ligand interaction detected (PLIP) MG.13: 2 residues within 4Å: Chain B: G.1 Ligands: MG.12 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oshima, K. et al., Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K-turn motif. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-02-07

Peptides

50S ribosomal protein L7Ae: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

50S ribosomal protein L7Ae

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