- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.2: 5 residues within 4Å:- Chain A: N.330, F.333, Q.348, L.351, D.352
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.330
- Water bridges: A:N.330, A:L.351
PEG.3: 2 residues within 4Å:- Chain A: A.154, N.158
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.158
- Water bridges: A:A.155
PEG.4: 5 residues within 4Å:- Chain A: K.226, S.227, G.229
- Chain B: T.218, D.220
No protein-ligand interaction detected (PLIP)PEG.7: 5 residues within 4Å:- Chain B: N.330, F.333, Q.348, L.351, D.352
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.330, B:D.352
- Water bridges: B:N.330, B:L.351
PEG.8: 2 residues within 4Å:- Chain B: A.154, N.158
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.158
- Water bridges: B:A.155
PEG.9: 5 residues within 4Å:- Chain A: T.218, D.220
- Chain B: K.226, S.227, G.229
No protein-ligand interaction detected (PLIP)- 2 x 8ML: 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methylidene-2-[(2S,3S,4R,5R)-1,2,3,4,5-pentakis(oxidanyl)-6-phosphonooxy-hexan-2-yl]-1,3-thiazolidin-5-yl]ethyl phosphono hydrogen phosphate(Non-covalent)
8ML.5: 31 residues within 4Å:- Chain A: R.376, D.399, L.400, S.403, V.433, E.435, F.459, F.462, Y.465, H.486, D.494, H.498, R.545
- Chain B: H.47, A.50, H.86, H.120, G.134, P.135, L.136, G.174, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Ligands: CA.1
34 PLIP interactions:14 interactions with chain A, 20 interactions with chain B- Hydrophobic interactions: A:D.399, A:F.462, A:Y.465, B:I.209, B:I.209
- Hydrogen bonds: A:S.403, A:H.498, B:H.120, B:G.134, B:L.136, B:D.175, B:D.175, B:G.176, B:E.180, B:N.205, B:H.281
- Water bridges: A:R.376, A:R.376, A:R.376, A:P.402, A:E.435, B:N.84, B:N.84, B:H.86, B:R.111, B:C.177, B:N.205
- Salt bridges: A:R.376, A:H.486, A:R.545, B:H.86, B:H.86, B:H.281
- pi-Stacking: A:F.462
8ML.10: 31 residues within 4Å:- Chain A: H.47, A.50, H.86, H.120, G.134, P.135, L.136, G.174, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Chain B: R.376, D.399, L.400, S.403, V.433, E.435, F.459, F.462, Y.465, H.486, D.494, H.498, R.545
- Ligands: CA.6
32 PLIP interactions:18 interactions with chain A, 14 interactions with chain B- Hydrophobic interactions: A:I.209, A:I.209, B:D.399, B:F.462, B:Y.465
- Hydrogen bonds: A:H.120, A:G.134, A:L.136, A:D.175, A:G.176, A:N.205, A:H.281, B:S.403, B:H.498
- Water bridges: A:N.84, A:N.84, A:H.86, A:R.111, A:C.177, A:N.205, B:R.376, B:R.376, B:R.376, B:P.402, B:T.458
- Salt bridges: A:H.86, A:H.86, A:H.281, B:R.376, B:H.486, B:R.545
- pi-Stacking: B:F.462
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, N.S. et al., Evidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions. Chembiochem (2018)
- Release Date
- 2018-06-27
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x 8ML: 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methylidene-2-[(2S,3S,4R,5R)-1,2,3,4,5-pentakis(oxidanyl)-6-phosphonooxy-hexan-2-yl]-1,3-thiazolidin-5-yl]ethyl phosphono hydrogen phosphate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, N.S. et al., Evidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions. Chembiochem (2018)
- Release Date
- 2018-06-27
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A