- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.97 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.2: 4 residues within 4Å:- Chain A: A.154, A.155, N.158, K.159
4 PLIP interactions:4 interactions with chain A- Water bridges: A:A.155, A:N.158, A:N.158, A:F.162
PEG.3: 4 residues within 4Å:- Chain A: K.226, S.227, G.229
- Chain B: T.218
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:T.218
- Water bridges: A:K.226, A:G.229
PEG.4: 4 residues within 4Å:- Chain A: N.330, F.333, L.351, D.352
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.348, A:D.352
PEG.9: 4 residues within 4Å:- Chain B: A.154, A.155, N.158, K.159
4 PLIP interactions:4 interactions with chain B- Water bridges: B:A.155, B:N.158, B:N.158, B:F.162
PEG.10: 4 residues within 4Å:- Chain A: T.218
- Chain B: K.226, S.227, G.229
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Water bridges: B:K.226, B:G.229, A:D.220
- Hydrogen bonds: A:T.218
PEG.11: 4 residues within 4Å:- Chain B: N.330, F.333, L.351, D.352
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.348
- 2 x F6R: FRUCTOSE -6-PHOSPHATE(Non-covalent)
F6R.5: 16 residues within 4Å:- Chain A: H.47, H.86, H.120, G.134, I.209, H.281
- Chain B: R.376, L.400, S.403, F.459, H.486, D.494, H.498, R.545
- Ligands: 8EL.6, TPP.7
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:S.403, A:H.120, A:H.281
- Salt bridges: B:R.376, B:H.486, B:R.545
- Water bridges: A:H.86, A:R.111
F6R.12: 16 residues within 4Å:- Chain A: R.376, L.400, S.403, F.459, H.486, D.494, H.498, R.545
- Chain B: H.47, H.86, H.120, G.134, I.209, H.281
- Ligands: 8EL.13, TPP.14
8 PLIP interactions:4 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:S.403, B:H.120, B:H.281
- Salt bridges: A:R.376, A:H.486, A:R.545
- Water bridges: B:H.86, B:R.111
- 2 x 8EL: 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate(Non-covalent)
8EL.6: 25 residues within 4Å:- Chain A: A.50, H.86, G.134, P.135, L.136, G.174, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Chain B: D.399, L.400, V.433, E.435, F.462, Y.465, H.498
- Ligands: CA.1, F6R.5, TPP.7
16 PLIP interactions:11 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:G.134, A:L.136, A:D.175, A:D.175, A:G.176, A:E.180, A:N.205
- Water bridges: A:N.84, B:E.435
- Salt bridges: A:H.86, A:H.86, A:H.281
- Hydrophobic interactions: B:D.399, B:F.462, B:Y.465
- pi-Stacking: B:F.462
8EL.13: 25 residues within 4Å:- Chain A: D.399, L.400, V.433, E.435, F.462, Y.465, H.498
- Chain B: A.50, H.86, G.134, P.135, L.136, G.174, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Ligands: CA.8, F6R.12, TPP.14
14 PLIP interactions:9 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:G.134, B:L.136, B:D.175, B:G.176, B:N.205
- Water bridges: B:N.84, A:T.458
- Salt bridges: B:H.86, B:H.86, B:H.281
- Hydrophobic interactions: A:D.399, A:F.462, A:Y.465
- pi-Stacking: A:F.462
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.7: 25 residues within 4Å:- Chain A: A.50, H.86, G.134, P.135, L.136, G.174, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Chain B: D.399, L.400, E.435, F.459, F.462, Y.465, H.498
- Ligands: CA.1, F6R.5, 8EL.6
21 PLIP interactions:15 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:L.136, B:D.399, B:L.400, B:F.462, B:Y.465
- Hydrogen bonds: A:G.134, A:L.136, A:D.175, A:D.175, A:G.176, A:E.180, A:N.205
- Water bridges: A:A.50, A:N.84, A:D.203, A:N.205, B:E.435
- Salt bridges: A:H.86, A:H.86, A:H.281
- pi-Stacking: B:F.462
TPP.14: 25 residues within 4Å:- Chain A: D.399, L.400, E.435, F.459, F.462, Y.465, H.498
- Chain B: A.50, H.86, G.134, P.135, L.136, G.174, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Ligands: CA.8, F6R.12, 8EL.13
19 PLIP interactions:13 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:L.136, A:D.399, A:L.400, A:F.462, A:Y.465
- Hydrogen bonds: B:G.134, B:L.136, B:D.175, B:G.176, B:N.205
- Water bridges: B:A.50, B:N.84, B:D.203, B:N.205, A:T.458
- Salt bridges: B:H.86, B:H.86, B:H.281
- pi-Stacking: A:F.462
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, N.S. et al., Evidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions. Chembiochem (2018)
- Release Date
- 2018-06-27
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.97 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x F6R: FRUCTOSE -6-PHOSPHATE(Non-covalent)
- 2 x 8EL: 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate(Non-covalent)
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, N.S. et al., Evidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions. Chembiochem (2018)
- Release Date
- 2018-06-27
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A