- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-hexamer
- Ligands
- 22 x GOL: GLYCEROL(Non-functional Binders)
- 3 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
AKG.8: 13 residues within 4Å:- Chain A: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, D.154, T.181, R.193, N.346, V.383, S.386
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:A.152
- Hydrogen bonds: A:G.80, A:Q.99, A:D.154, A:T.181, A:N.346, A:S.386
- Water bridges: A:V.383
- Salt bridges: A:K.78, A:K.102, A:K.114, A:R.193
AKG.15: 12 residues within 4Å:- Chain B: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, T.181, V.383, S.386
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:G.80, B:Q.99, B:Q.99, B:D.154, B:T.181, B:S.386
- Water bridges: B:K.102, B:K.102, B:V.383
- Salt bridges: B:K.78, B:K.102, B:K.114
AKG.20: 11 residues within 4Å:- Chain C: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, T.181, R.193, V.383, S.386
15 PLIP interactions:15 interactions with chain C- Hydrophobic interactions: C:V.383
- Hydrogen bonds: C:G.80, C:Q.99, C:T.181, C:S.386
- Water bridges: C:K.102, C:K.102, C:K.114, C:D.154, C:D.154, C:V.383
- Salt bridges: C:K.78, C:K.102, C:K.114, C:R.193
- 6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.9: 6 residues within 4Å:- Chain A: T.138, C.141, K.142, I.172, R.173
- Chain F: I.172
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:I.172
BME.16: 6 residues within 4Å:- Chain B: C.141, K.142, I.172, R.173
- Chain D: I.172
- Ligands: BME.22
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:I.172
BME.21: 6 residues within 4Å:- Chain C: T.138, C.141, K.142, I.172, R.173
- Chain E: I.172
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.142
BME.22: 6 residues within 4Å:- Chain B: I.172
- Chain D: C.141, K.142, I.172, R.173
- Ligands: BME.16
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.172
BME.27: 6 residues within 4Å:- Chain C: I.172
- Chain E: T.138, C.141, K.142, I.172, R.173
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:K.142
BME.31: 5 residues within 4Å:- Chain A: I.172
- Chain F: C.141, K.142, I.172, R.173
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:K.142
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prakash, P. et al., Structural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase. J. Biol. Chem. (2018)
- Release Date
- 2018-03-21
- Peptides
- Glutamate dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-hexamer
- Ligands
- 22 x GOL: GLYCEROL(Non-functional Binders)
- 3 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
- 6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prakash, P. et al., Structural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase. J. Biol. Chem. (2018)
- Release Date
- 2018-03-21
- Peptides
- Glutamate dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F