- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 6 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
AKG.2: 15 residues within 4Å:- Chain A: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, R.193, N.346, G.382, V.383, S.386
- Ligands: NDP.1
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:Q.99, A:K.114, A:D.154, A:T.181, A:N.346, A:S.386
- Water bridges: A:K.102
- Salt bridges: A:K.78, A:K.102, A:K.114, A:R.193
AKG.29: 15 residues within 4Å:- Chain B: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, R.193, N.346, G.382, V.383, S.386
- Ligands: NDP.28
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:Q.99, B:K.114, B:D.154, B:T.181, B:N.346, B:S.386
- Water bridges: B:K.102
- Salt bridges: B:K.78, B:K.102, B:K.114, B:R.193
AKG.56: 15 residues within 4Å:- Chain C: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, R.193, N.346, G.382, V.383, S.386
- Ligands: NDP.55
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:Q.99, C:K.114, C:D.154, C:T.181, C:N.346, C:S.386
- Water bridges: C:K.102
- Salt bridges: C:K.78, C:K.102, C:K.114, C:R.193
AKG.83: 15 residues within 4Å:- Chain D: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, R.193, N.346, G.382, V.383, S.386
- Ligands: NDP.82
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:Q.99, D:K.114, D:D.154, D:D.154, D:T.181, D:N.346, D:S.386
- Water bridges: D:K.102
- Salt bridges: D:K.78, D:K.102, D:K.114, D:R.193
AKG.110: 15 residues within 4Å:- Chain E: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, R.193, N.346, G.382, V.383, S.386
- Ligands: NDP.109
12 PLIP interactions:12 interactions with chain E- Hydrogen bonds: E:Q.99, E:K.114, E:D.154, E:D.154, E:T.181, E:N.346, E:S.386
- Water bridges: E:K.102
- Salt bridges: E:K.78, E:K.102, E:K.114, E:R.193
AKG.137: 15 residues within 4Å:- Chain F: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, R.193, N.346, G.382, V.383, S.386
- Ligands: NDP.136
12 PLIP interactions:12 interactions with chain F- Hydrogen bonds: F:Q.99, F:K.114, F:D.154, F:D.154, F:T.181, F:N.346, F:S.386
- Water bridges: F:K.102
- Salt bridges: F:K.78, F:K.102, F:K.114, F:R.193
- 138 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 5 residues within 4Å:- Chain A: Q.12, N.323, T.350, Q.351, E.352
Ligand excluded by PLIPGOL.4: 5 residues within 4Å:- Chain A: K.35, A.38
- Chain F: V.60, Q.61, V.62
Ligand excluded by PLIPGOL.5: 10 residues within 4Å:- Chain A: K.142, H.143, I.144, T.148, R.173
- Chain B: R.173, N.174, Q.175
- Ligands: GOL.25, GOL.160
Ligand excluded by PLIPGOL.6: 7 residues within 4Å:- Chain A: L.105, G.107, D.414, C.415, N.418, K.448
- Ligands: GOL.39
Ligand excluded by PLIPGOL.7: 6 residues within 4Å:- Chain A: L.397, S.398, W.399, E.403
- Chain C: R.407
- Ligands: GOL.8
Ligand excluded by PLIPGOL.8: 4 residues within 4Å:- Chain A: W.399, E.403, R.407
- Ligands: GOL.7
Ligand excluded by PLIPGOL.9: 5 residues within 4Å:- Chain A: E.217, K.220, G.221, K.222, D.314
Ligand excluded by PLIPGOL.10: 4 residues within 4Å:- Chain A: H.84, P.85, S.86
- Ligands: NDP.1
Ligand excluded by PLIPGOL.11: 3 residues within 4Å:- Chain A: Y.14, S.41
- Chain F: R.64
Ligand excluded by PLIPGOL.12: 5 residues within 4Å:- Chain A: G.185, S.186
- Chain C: G.107, K.448
- Ligands: GOL.60
Ligand excluded by PLIPGOL.13: 3 residues within 4Å:- Chain A: I.334, G.337, K.339
Ligand excluded by PLIPGOL.14: 3 residues within 4Å:- Chain A: T.428, P.429, A.430
Ligand excluded by PLIPGOL.15: 5 residues within 4Å:- Chain A: R.223, G.261, E.262, G.311, K.312
Ligand excluded by PLIPGOL.16: 5 residues within 4Å:- Chain A: G.58, N.59
- Chain D: N.127
- Chain F: K.35, W.460
Ligand excluded by PLIPGOL.17: 5 residues within 4Å:- Chain A: W.53, Q.61, V.62, N.63, K.124
Ligand excluded by PLIPGOL.18: 4 residues within 4Å:- Chain A: E.269, P.291, D.294, K.297
Ligand excluded by PLIPGOL.19: 7 residues within 4Å:- Chain A: D.252, S.253, G.255, G.303, A.304, R.305
- Ligands: NDP.1
Ligand excluded by PLIPGOL.20: 7 residues within 4Å:- Chain A: A.146, W.176, E.177, G.178, N.393, S.394
- Chain B: R.396
Ligand excluded by PLIPGOL.21: 5 residues within 4Å:- Chain A: Y.14, A.18, E.22, R.34, L.37
Ligand excluded by PLIPGOL.22: 4 residues within 4Å:- Chain A: K.220, E.242, L.243, G.244
Ligand excluded by PLIPGOL.23: 1 residues within 4Å:- Chain A: S.293
Ligand excluded by PLIPGOL.24: 8 residues within 4Å:- Chain A: A.152, G.153, V.157, T.158, T.181, G.182, R.193
- Ligands: NDP.1
Ligand excluded by PLIPGOL.25: 7 residues within 4Å:- Chain A: K.142, H.143
- Chain F: K.142, H.143
- Ligands: GOL.5, GOL.140, GOL.160
Ligand excluded by PLIPGOL.30: 5 residues within 4Å:- Chain B: Q.12, N.323, T.350, Q.351, E.352
Ligand excluded by PLIPGOL.31: 5 residues within 4Å:- Chain B: K.35, A.38
- Chain E: V.60, Q.61, V.62
Ligand excluded by PLIPGOL.32: 10 residues within 4Å:- Chain B: K.142, H.143, I.144, T.148, R.173
- Chain C: R.173, N.174, Q.175
- Ligands: GOL.52, GOL.133
Ligand excluded by PLIPGOL.33: 7 residues within 4Å:- Chain B: L.105, G.107, D.414, C.415, N.418, K.448
- Ligands: GOL.66
Ligand excluded by PLIPGOL.34: 6 residues within 4Å:- Chain A: R.407
- Chain B: L.397, S.398, W.399, E.403
- Ligands: GOL.35
Ligand excluded by PLIPGOL.35: 4 residues within 4Å:- Chain B: W.399, E.403, R.407
- Ligands: GOL.34
Ligand excluded by PLIPGOL.36: 5 residues within 4Å:- Chain B: E.217, K.220, G.221, K.222, D.314
Ligand excluded by PLIPGOL.37: 4 residues within 4Å:- Chain B: H.84, P.85, S.86
- Ligands: NDP.28
Ligand excluded by PLIPGOL.38: 3 residues within 4Å:- Chain B: Y.14, S.41
- Chain E: R.64
Ligand excluded by PLIPGOL.39: 5 residues within 4Å:- Chain A: G.107, K.448
- Chain B: G.185, S.186
- Ligands: GOL.6
Ligand excluded by PLIPGOL.40: 3 residues within 4Å:- Chain B: I.334, G.337, K.339
Ligand excluded by PLIPGOL.41: 3 residues within 4Å:- Chain B: T.428, P.429, A.430
Ligand excluded by PLIPGOL.42: 5 residues within 4Å:- Chain B: R.223, G.261, E.262, G.311, K.312
Ligand excluded by PLIPGOL.43: 5 residues within 4Å:- Chain B: G.58, N.59
- Chain E: K.35, W.460
- Chain F: N.127
Ligand excluded by PLIPGOL.44: 5 residues within 4Å:- Chain B: W.53, Q.61, V.62, N.63, K.124
Ligand excluded by PLIPGOL.45: 4 residues within 4Å:- Chain B: E.269, P.291, D.294, K.297
Ligand excluded by PLIPGOL.46: 7 residues within 4Å:- Chain B: D.252, S.253, G.255, G.303, A.304, R.305
- Ligands: NDP.28
Ligand excluded by PLIPGOL.47: 7 residues within 4Å:- Chain B: A.146, W.176, E.177, G.178, N.393, S.394
- Chain C: R.396
Ligand excluded by PLIPGOL.48: 5 residues within 4Å:- Chain B: Y.14, A.18, E.22, R.34, L.37
Ligand excluded by PLIPGOL.49: 4 residues within 4Å:- Chain B: K.220, E.242, L.243, G.244
Ligand excluded by PLIPGOL.50: 1 residues within 4Å:- Chain B: S.293
Ligand excluded by PLIPGOL.51: 8 residues within 4Å:- Chain B: A.152, G.153, V.157, T.158, T.181, G.182, R.193
- Ligands: NDP.28
Ligand excluded by PLIPGOL.52: 7 residues within 4Å:- Chain B: K.142, H.143
- Chain E: K.142, H.143
- Ligands: GOL.32, GOL.113, GOL.133
Ligand excluded by PLIPGOL.57: 5 residues within 4Å:- Chain C: Q.12, N.323, T.350, Q.351, E.352
Ligand excluded by PLIPGOL.58: 5 residues within 4Å:- Chain C: K.35, A.38
- Chain D: V.60, Q.61, V.62
Ligand excluded by PLIPGOL.59: 10 residues within 4Å:- Chain A: R.173, N.174, Q.175
- Chain C: K.142, H.143, I.144, T.148, R.173
- Ligands: GOL.79, GOL.106
Ligand excluded by PLIPGOL.60: 7 residues within 4Å:- Chain C: L.105, G.107, D.414, C.415, N.418, K.448
- Ligands: GOL.12
Ligand excluded by PLIPGOL.61: 6 residues within 4Å:- Chain B: R.407
- Chain C: L.397, S.398, W.399, E.403
- Ligands: GOL.62
Ligand excluded by PLIPGOL.62: 4 residues within 4Å:- Chain C: W.399, E.403, R.407
- Ligands: GOL.61
Ligand excluded by PLIPGOL.63: 5 residues within 4Å:- Chain C: E.217, K.220, G.221, K.222, D.314
Ligand excluded by PLIPGOL.64: 4 residues within 4Å:- Chain C: H.84, P.85, S.86
- Ligands: NDP.55
Ligand excluded by PLIPGOL.65: 3 residues within 4Å:- Chain C: Y.14, S.41
- Chain D: R.64
Ligand excluded by PLIPGOL.66: 5 residues within 4Å:- Chain B: G.107, K.448
- Chain C: G.185, S.186
- Ligands: GOL.33
Ligand excluded by PLIPGOL.67: 3 residues within 4Å:- Chain C: I.334, G.337, K.339
Ligand excluded by PLIPGOL.68: 3 residues within 4Å:- Chain C: T.428, P.429, A.430
Ligand excluded by PLIPGOL.69: 5 residues within 4Å:- Chain C: R.223, G.261, E.262, G.311, K.312
Ligand excluded by PLIPGOL.70: 5 residues within 4Å:- Chain C: G.58, N.59
- Chain D: K.35, W.460
- Chain E: N.127
Ligand excluded by PLIPGOL.71: 5 residues within 4Å:- Chain C: W.53, Q.61, V.62, N.63, K.124
Ligand excluded by PLIPGOL.72: 4 residues within 4Å:- Chain C: E.269, P.291, D.294, K.297
Ligand excluded by PLIPGOL.73: 7 residues within 4Å:- Chain C: D.252, S.253, G.255, G.303, A.304, R.305
- Ligands: NDP.55
Ligand excluded by PLIPGOL.74: 7 residues within 4Å:- Chain A: R.396
- Chain C: A.146, W.176, E.177, G.178, N.393, S.394
Ligand excluded by PLIPGOL.75: 5 residues within 4Å:- Chain C: Y.14, A.18, E.22, R.34, L.37
Ligand excluded by PLIPGOL.76: 4 residues within 4Å:- Chain C: K.220, E.242, L.243, G.244
Ligand excluded by PLIPGOL.77: 1 residues within 4Å:- Chain C: S.293
Ligand excluded by PLIPGOL.78: 8 residues within 4Å:- Chain C: A.152, G.153, V.157, T.158, T.181, G.182, R.193
- Ligands: NDP.55
Ligand excluded by PLIPGOL.79: 7 residues within 4Å:- Chain C: K.142, H.143
- Chain D: K.142, H.143
- Ligands: GOL.59, GOL.86, GOL.106
Ligand excluded by PLIPGOL.84: 5 residues within 4Å:- Chain D: Q.12, N.323, T.350, Q.351, E.352
Ligand excluded by PLIPGOL.85: 5 residues within 4Å:- Chain C: V.60, Q.61, V.62
- Chain D: K.35, A.38
Ligand excluded by PLIPGOL.86: 10 residues within 4Å:- Chain D: K.142, H.143, I.144, T.148, R.173
- Chain E: R.173, N.174, Q.175
- Ligands: GOL.79, GOL.106
Ligand excluded by PLIPGOL.87: 7 residues within 4Å:- Chain D: L.105, G.107, D.414, C.415, N.418, K.448
- Ligands: GOL.120
Ligand excluded by PLIPGOL.88: 6 residues within 4Å:- Chain D: L.397, S.398, W.399, E.403
- Chain F: R.407
- Ligands: GOL.89
Ligand excluded by PLIPGOL.89: 4 residues within 4Å:- Chain D: W.399, E.403, R.407
- Ligands: GOL.88
Ligand excluded by PLIPGOL.90: 5 residues within 4Å:- Chain D: E.217, K.220, G.221, K.222, D.314
Ligand excluded by PLIPGOL.91: 4 residues within 4Å:- Chain D: H.84, P.85, S.86
- Ligands: NDP.82
Ligand excluded by PLIPGOL.92: 3 residues within 4Å:- Chain C: R.64
- Chain D: Y.14, S.41
Ligand excluded by PLIPGOL.93: 5 residues within 4Å:- Chain D: G.185, S.186
- Chain F: G.107, K.448
- Ligands: GOL.141
Ligand excluded by PLIPGOL.94: 3 residues within 4Å:- Chain D: I.334, G.337, K.339
Ligand excluded by PLIPGOL.95: 3 residues within 4Å:- Chain D: T.428, P.429, A.430
Ligand excluded by PLIPGOL.96: 5 residues within 4Å:- Chain D: R.223, G.261, E.262, G.311, K.312
Ligand excluded by PLIPGOL.97: 5 residues within 4Å:- Chain A: N.127
- Chain C: K.35, W.460
- Chain D: G.58, N.59
Ligand excluded by PLIPGOL.98: 5 residues within 4Å:- Chain D: W.53, Q.61, V.62, N.63, K.124
Ligand excluded by PLIPGOL.99: 4 residues within 4Å:- Chain D: E.269, P.291, D.294, K.297
Ligand excluded by PLIPGOL.100: 7 residues within 4Å:- Chain D: D.252, S.253, G.255, G.303, A.304, R.305
- Ligands: NDP.82
Ligand excluded by PLIPGOL.101: 7 residues within 4Å:- Chain D: A.146, W.176, E.177, G.178, N.393, S.394
- Chain E: R.396
Ligand excluded by PLIPGOL.102: 5 residues within 4Å:- Chain D: Y.14, A.18, E.22, R.34, L.37
Ligand excluded by PLIPGOL.103: 4 residues within 4Å:- Chain D: K.220, E.242, L.243, G.244
Ligand excluded by PLIPGOL.104: 1 residues within 4Å:- Chain D: S.293
Ligand excluded by PLIPGOL.105: 8 residues within 4Å:- Chain D: A.152, G.153, V.157, T.158, T.181, G.182, R.193
- Ligands: NDP.82
Ligand excluded by PLIPGOL.106: 7 residues within 4Å:- Chain C: K.142, H.143
- Chain D: K.142, H.143
- Ligands: GOL.59, GOL.79, GOL.86
Ligand excluded by PLIPGOL.111: 5 residues within 4Å:- Chain E: Q.12, N.323, T.350, Q.351, E.352
Ligand excluded by PLIPGOL.112: 5 residues within 4Å:- Chain B: V.60, Q.61, V.62
- Chain E: K.35, A.38
Ligand excluded by PLIPGOL.113: 10 residues within 4Å:- Chain E: K.142, H.143, I.144, T.148, R.173
- Chain F: R.173, N.174, Q.175
- Ligands: GOL.52, GOL.133
Ligand excluded by PLIPGOL.114: 7 residues within 4Å:- Chain E: L.105, G.107, D.414, C.415, N.418, K.448
- Ligands: GOL.147
Ligand excluded by PLIPGOL.115: 6 residues within 4Å:- Chain D: R.407
- Chain E: L.397, S.398, W.399, E.403
- Ligands: GOL.116
Ligand excluded by PLIPGOL.116: 4 residues within 4Å:- Chain E: W.399, E.403, R.407
- Ligands: GOL.115
Ligand excluded by PLIPGOL.117: 5 residues within 4Å:- Chain E: E.217, K.220, G.221, K.222, D.314
Ligand excluded by PLIPGOL.118: 4 residues within 4Å:- Chain E: H.84, P.85, S.86
- Ligands: NDP.109
Ligand excluded by PLIPGOL.119: 3 residues within 4Å:- Chain B: R.64
- Chain E: Y.14, S.41
Ligand excluded by PLIPGOL.120: 5 residues within 4Å:- Chain D: G.107, K.448
- Chain E: G.185, S.186
- Ligands: GOL.87
Ligand excluded by PLIPGOL.121: 3 residues within 4Å:- Chain E: I.334, G.337, K.339
Ligand excluded by PLIPGOL.122: 3 residues within 4Å:- Chain E: T.428, P.429, A.430
Ligand excluded by PLIPGOL.123: 5 residues within 4Å:- Chain E: R.223, G.261, E.262, G.311, K.312
Ligand excluded by PLIPGOL.124: 5 residues within 4Å:- Chain B: K.35, W.460
- Chain C: N.127
- Chain E: G.58, N.59
Ligand excluded by PLIPGOL.125: 5 residues within 4Å:- Chain E: W.53, Q.61, V.62, N.63, K.124
Ligand excluded by PLIPGOL.126: 4 residues within 4Å:- Chain E: E.269, P.291, D.294, K.297
Ligand excluded by PLIPGOL.127: 7 residues within 4Å:- Chain E: D.252, S.253, G.255, G.303, A.304, R.305
- Ligands: NDP.109
Ligand excluded by PLIPGOL.128: 7 residues within 4Å:- Chain E: A.146, W.176, E.177, G.178, N.393, S.394
- Chain F: R.396
Ligand excluded by PLIPGOL.129: 5 residues within 4Å:- Chain E: Y.14, A.18, E.22, R.34, L.37
Ligand excluded by PLIPGOL.130: 4 residues within 4Å:- Chain E: K.220, E.242, L.243, G.244
Ligand excluded by PLIPGOL.131: 1 residues within 4Å:- Chain E: S.293
Ligand excluded by PLIPGOL.132: 8 residues within 4Å:- Chain E: A.152, G.153, V.157, T.158, T.181, G.182, R.193
- Ligands: NDP.109
Ligand excluded by PLIPGOL.133: 7 residues within 4Å:- Chain B: K.142, H.143
- Chain E: K.142, H.143
- Ligands: GOL.32, GOL.52, GOL.113
Ligand excluded by PLIPGOL.138: 5 residues within 4Å:- Chain F: Q.12, N.323, T.350, Q.351, E.352
Ligand excluded by PLIPGOL.139: 5 residues within 4Å:- Chain A: V.60, Q.61, V.62
- Chain F: K.35, A.38
Ligand excluded by PLIPGOL.140: 10 residues within 4Å:- Chain D: R.173, N.174, Q.175
- Chain F: K.142, H.143, I.144, T.148, R.173
- Ligands: GOL.25, GOL.160
Ligand excluded by PLIPGOL.141: 7 residues within 4Å:- Chain F: L.105, G.107, D.414, C.415, N.418, K.448
- Ligands: GOL.93
Ligand excluded by PLIPGOL.142: 6 residues within 4Å:- Chain E: R.407
- Chain F: L.397, S.398, W.399, E.403
- Ligands: GOL.143
Ligand excluded by PLIPGOL.143: 4 residues within 4Å:- Chain F: W.399, E.403, R.407
- Ligands: GOL.142
Ligand excluded by PLIPGOL.144: 5 residues within 4Å:- Chain F: E.217, K.220, G.221, K.222, D.314
Ligand excluded by PLIPGOL.145: 4 residues within 4Å:- Chain F: H.84, P.85, S.86
- Ligands: NDP.136
Ligand excluded by PLIPGOL.146: 3 residues within 4Å:- Chain A: R.64
- Chain F: Y.14, S.41
Ligand excluded by PLIPGOL.147: 5 residues within 4Å:- Chain E: G.107, K.448
- Chain F: G.185, S.186
- Ligands: GOL.114
Ligand excluded by PLIPGOL.148: 3 residues within 4Å:- Chain F: I.334, G.337, K.339
Ligand excluded by PLIPGOL.149: 3 residues within 4Å:- Chain F: T.428, P.429, A.430
Ligand excluded by PLIPGOL.150: 5 residues within 4Å:- Chain F: R.223, G.261, E.262, G.311, K.312
Ligand excluded by PLIPGOL.151: 5 residues within 4Å:- Chain A: K.35, W.460
- Chain B: N.127
- Chain F: G.58, N.59
Ligand excluded by PLIPGOL.152: 5 residues within 4Å:- Chain F: W.53, Q.61, V.62, N.63, K.124
Ligand excluded by PLIPGOL.153: 4 residues within 4Å:- Chain F: E.269, P.291, D.294, K.297
Ligand excluded by PLIPGOL.154: 7 residues within 4Å:- Chain F: D.252, S.253, G.255, G.303, A.304, R.305
- Ligands: NDP.136
Ligand excluded by PLIPGOL.155: 7 residues within 4Å:- Chain D: R.396
- Chain F: A.146, W.176, E.177, G.178, N.393, S.394
Ligand excluded by PLIPGOL.156: 5 residues within 4Å:- Chain F: Y.14, A.18, E.22, R.34, L.37
Ligand excluded by PLIPGOL.157: 4 residues within 4Å:- Chain F: K.220, E.242, L.243, G.244
Ligand excluded by PLIPGOL.158: 1 residues within 4Å:- Chain F: S.293
Ligand excluded by PLIPGOL.159: 8 residues within 4Å:- Chain F: A.152, G.153, V.157, T.158, T.181, G.182, R.193
- Ligands: NDP.136
Ligand excluded by PLIPGOL.160: 7 residues within 4Å:- Chain A: K.142, H.143
- Chain F: K.142, H.143
- Ligands: GOL.5, GOL.25, GOL.140
Ligand excluded by PLIP- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.26: 5 residues within 4Å:- Chain A: E.206, H.207, A.210, H.211, F.416
4 PLIP interactions:4 interactions with chain A- Water bridges: A:E.206, A:E.206, A:H.207, A:H.211
PEG.27: 8 residues within 4Å:- Chain A: H.211, A.212, N.214, G.366, A.367, G.432, L.434, P.435
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.212
- Water bridges: A:A.367
PEG.53: 5 residues within 4Å:- Chain B: E.206, H.207, A.210, H.211, F.416
4 PLIP interactions:4 interactions with chain B- Water bridges: B:E.206, B:E.206, B:H.207, B:H.211
PEG.54: 8 residues within 4Å:- Chain B: H.211, A.212, N.214, G.366, A.367, G.432, L.434, P.435
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.212
- Water bridges: B:A.367
PEG.80: 5 residues within 4Å:- Chain C: E.206, H.207, A.210, H.211, F.416
4 PLIP interactions:4 interactions with chain C- Water bridges: C:E.206, C:E.206, C:H.207, C:H.211
PEG.81: 8 residues within 4Å:- Chain C: H.211, A.212, N.214, G.366, A.367, G.432, L.434, P.435
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:A.212
- Water bridges: C:A.367
PEG.107: 5 residues within 4Å:- Chain D: E.206, H.207, A.210, H.211, F.416
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:H.207
- Water bridges: D:E.206, D:E.206, D:E.206, D:H.207
PEG.108: 8 residues within 4Å:- Chain D: H.211, A.212, N.214, G.366, A.367, G.432, L.434, P.435
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:A.212
- Water bridges: D:A.367
PEG.134: 5 residues within 4Å:- Chain E: E.206, H.207, A.210, H.211, F.416
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:H.207
- Water bridges: E:E.206, E:E.206, E:E.206, E:H.207
PEG.135: 8 residues within 4Å:- Chain E: H.211, A.212, N.214, G.366, A.367, G.432, L.434, P.435
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:A.212
- Water bridges: E:A.367
PEG.161: 5 residues within 4Å:- Chain F: E.206, H.207, A.210, H.211, F.416
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:H.207
- Water bridges: F:E.206, F:E.206, F:E.206, F:H.207
PEG.162: 8 residues within 4Å:- Chain F: H.211, A.212, N.214, G.366, A.367, G.432, L.434, P.435
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:A.212
- Water bridges: F:A.367
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prakash, P. et al., Structural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase. J. Biol. Chem. (2018)
- Release Date
- 2018-03-21
- Peptides
- Glutamate dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 6 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
- 138 x GOL: GLYCEROL(Non-functional Binders)
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prakash, P. et al., Structural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase. J. Biol. Chem. (2018)
- Release Date
- 2018-03-21
- Peptides
- Glutamate dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A