SMTL ID : 5xw0.1

Crystal Structure of Aspergillus niger Glutamate Dehydrogenase Complexed With Isophthalate and NADPH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

6 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 29 residues within 4Å: Chain A: R.82, H.84, K.122, G.153, D.154, I.155, G.156, R.193, T.197, G.228, S.229, G.230, N.231, V.232, S.251, D.252, S.253, K.277, Q.282, S.319, A.320, T.321, G.344, S.345, N.346, N.379 Ligands: 8G0.2, GOL.7, GOL.8 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:T.197, A:V.232, A:N.379 Hydrogen bonds: A:R.82, A:H.84, A:D.154, A:G.156, A:R.193, A:R.193, A:S.229, A:S.229, A:N.231, A:N.231, A:V.232, A:S.253, A:S.253, A:Q.282, A:A.320, A:N.346, A:N.346 Water bridges: A:R.82, A:S.86, A:K.122, A:G.153, A:T.197, A:G.230, A:A.233, A:S.253, A:S.253 Salt bridges: A:K.122, A:K.277 NDP.20: 29 residues within 4Å: Chain B: R.82, H.84, K.122, G.153, D.154, I.155, G.156, R.193, T.197, G.228, S.229, G.230, N.231, V.232, S.251, D.252, S.253, K.277, Q.282, S.319, A.320, T.321, G.344, S.345, N.346, N.379 Ligands: 8G0.21, GOL.26, GOL.27 31 PLIP interactions: 31 interactions with chain B Hydrophobic interactions: B:T.197, B:V.232, B:N.379 Hydrogen bonds: B:R.82, B:H.84, B:D.154, B:G.156, B:R.193, B:R.193, B:S.229, B:S.229, B:N.231, B:N.231, B:V.232, B:S.253, B:S.253, B:Q.282, B:A.320, B:N.346, B:N.346 Water bridges: B:R.82, B:S.86, B:K.122, B:G.153, B:T.197, B:G.230, B:A.233, B:S.253, B:S.253 Salt bridges: B:K.122, B:K.277 NDP.39: 29 residues within 4Å: Chain C: R.82, H.84, K.122, G.153, D.154, I.155, G.156, R.193, T.197, G.228, S.229, G.230, N.231, V.232, S.251, D.252, S.253, K.277, Q.282, S.319, A.320, T.321, G.344, S.345, N.346, N.379 Ligands: 8G0.40, GOL.45, GOL.46 31 PLIP interactions: 31 interactions with chain C Hydrophobic interactions: C:T.197, C:V.232, C:N.379 Hydrogen bonds: C:R.82, C:H.84, C:D.154, C:G.156, C:R.193, C:R.193, C:S.229, C:S.229, C:N.231, C:N.231, C:V.232, C:S.253, C:S.253, C:Q.282, C:A.320, C:N.346, C:N.346 Water bridges: C:R.82, C:S.86, C:K.122, C:G.153, C:T.197, C:G.230, C:A.233, C:S.253, C:S.253 Salt bridges: C:K.122, C:K.277 NDP.58: 29 residues within 4Å: Chain D: R.82, H.84, K.122, G.153, D.154, I.155, G.156, R.193, T.197, G.228, S.229, G.230, N.231, V.232, S.251, D.252, S.253, K.277, Q.282, S.319, A.320, T.321, G.344, S.345, N.346, N.379 Ligands: 8G0.59, GOL.64, GOL.65 33 PLIP interactions: 33 interactions with chain D Hydrophobic interactions: D:T.197, D:V.232, D:N.379 Hydrogen bonds: D:R.82, D:H.84, D:D.154, D:G.156, D:R.193, D:R.193, D:T.197, D:S.229, D:S.229, D:N.231, D:N.231, D:V.232, D:S.253, D:S.253, D:Q.282, D:A.320, D:T.321, D:N.346, D:N.346 Water bridges: D:R.82, D:S.86, D:K.122, D:G.153, D:T.197, D:G.230, D:A.233, D:S.253, D:S.253 Salt bridges: D:K.122, D:K.277 NDP.77: 29 residues within 4Å: Chain E: R.82, H.84, K.122, G.153, D.154, I.155, G.156, R.193, T.197, G.228, S.229, G.230, N.231, V.232, S.251, D.252, S.253, K.277, Q.282, S.319, A.320, T.321, G.344, S.345, N.346, N.379 Ligands: 8G0.78, GOL.83, GOL.84 33 PLIP interactions: 33 interactions with chain E Hydrophobic interactions: E:T.197, E:V.232, E:N.379 Hydrogen bonds: E:R.82, E:H.84, E:D.154, E:G.156, E:R.193, E:R.193, E:T.197, E:S.229, E:S.229, E:N.231, E:N.231, E:V.232, E:S.253, E:S.253, E:Q.282, E:A.320, E:T.321, E:N.346, E:N.346 Water bridges: E:R.82, E:S.86, E:K.122, E:G.153, E:T.197, E:G.230, E:A.233, E:S.253, E:S.253 Salt bridges: E:K.122, E:K.277 NDP.96: 29 residues within 4Å: Chain F: R.82, H.84, K.122, G.153, D.154, I.155, G.156, R.193, T.197, G.228, S.229, G.230, N.231, V.232, S.251, D.252, S.253, K.277, Q.282, S.319, A.320, T.321, G.344, S.345, N.346, N.379 Ligands: 8G0.97, GOL.102, GOL.103 33 PLIP interactions: 33 interactions with chain F Hydrophobic interactions: F:T.197, F:V.232, F:N.379 Hydrogen bonds: F:R.82, F:H.84, F:D.154, F:G.156, F:R.193, F:R.193, F:T.197, F:S.229, F:S.229, F:N.231, F:N.231, F:V.232, F:S.253, F:S.253, F:Q.282, F:A.320, F:T.321, F:N.346, F:N.346 Water bridges: F:R.82, F:S.86, F:K.122, F:G.153, F:T.197, F:G.230, F:A.233, F:S.253, F:S.253 Salt bridges: F:K.122, F:K.277

6 x 8G0: benzene-1,3-dicarboxylic acid(Non-covalent)

8G0.2: 15 residues within 4Å: Chain A: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, T.181, R.193, N.346, V.383, S.386 Ligands: NDP.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.152, A:V.383 Hydrogen bonds: A:Q.99, A:D.154, A:T.181, A:N.346, A:S.386 Water bridges: A:K.102 Salt bridges: A:K.78, A:K.102, A:K.114, A:R.193 8G0.21: 15 residues within 4Å: Chain B: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, T.181, R.193, N.346, V.383, S.386 Ligands: NDP.20 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:A.152, B:V.383 Hydrogen bonds: B:Q.99, B:D.154, B:T.181, B:N.346, B:S.386 Water bridges: B:K.102 Salt bridges: B:K.78, B:K.102, B:K.114, B:R.193 8G0.40: 15 residues within 4Å: Chain C: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, T.181, R.193, N.346, V.383, S.386 Ligands: NDP.39 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:A.152, C:V.383 Hydrogen bonds: C:Q.99, C:D.154, C:T.181, C:N.346, C:S.386 Water bridges: C:K.102 Salt bridges: C:K.78, C:K.102, C:K.114, C:R.193 8G0.59: 15 residues within 4Å: Chain D: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, T.181, R.193, N.346, V.383, S.386 Ligands: NDP.58 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:A.152, D:V.383 Hydrogen bonds: D:Q.99, D:D.154, D:D.154, D:T.181, D:N.346, D:S.386 Water bridges: D:K.102 Salt bridges: D:K.78, D:K.102, D:K.114, D:R.193 8G0.78: 15 residues within 4Å: Chain E: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, T.181, R.193, N.346, V.383, S.386 Ligands: NDP.77 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:A.152, E:V.383 Hydrogen bonds: E:Q.99, E:D.154, E:D.154, E:T.181, E:N.346, E:S.386 Water bridges: E:K.102 Salt bridges: E:K.78, E:K.102, E:K.114, E:R.193 8G0.97: 15 residues within 4Å: Chain F: K.78, G.79, G.80, Q.99, K.102, K.114, A.152, G.153, D.154, T.181, R.193, N.346, V.383, S.386 Ligands: NDP.96 13 PLIP interactions: 13 interactions with chain F Hydrophobic interactions: F:A.152, F:V.383 Hydrogen bonds: F:Q.99, F:D.154, F:D.154, F:T.181, F:N.346, F:S.386 Water bridges: F:K.102 Salt bridges: F:K.78, F:K.102, F:K.114, F:R.193

78 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: V.42, P.43, V.46, K.93 Chain F: Q.48, F.49, R.50, R.64 Ligand excluded by PLIP GOL.4: 5 residues within 4Å: Chain A: K.183, G.184, G.185, S.190, P.194 Ligand excluded by PLIP GOL.5: 10 residues within 4Å: Chain A: R.45, S.72, P.76, Y.77, D.147, T.148 Chain B: R.170, N.174, Q.175, W.176 Ligand excluded by PLIP GOL.6: 7 residues within 4Å: Chain A: L.105, G.107, D.414, C.415, N.418, K.448 Ligands: PEG.18 Ligand excluded by PLIP GOL.7: 8 residues within 4Å: Chain A: A.152, G.153, T.181, G.182, R.193, P.194, N.231 Ligands: NDP.1 Ligand excluded by PLIP GOL.8: 6 residues within 4Å: Chain A: R.305, T.321, Q.322, N.323 Ligands: NDP.1, GOL.13 Ligand excluded by PLIP GOL.9: 3 residues within 4Å: Chain A: W.399, E.403, R.407 Ligand excluded by PLIP GOL.10: 3 residues within 4Å: Chain A: E.11, Y.14, S.41 Ligand excluded by PLIP GOL.11: 5 residues within 4Å: Chain A: Y.33, T.447, K.448, A.451 Ligands: PEG.18 Ligand excluded by PLIP GOL.12: 8 residues within 4Å: Chain A: K.142, H.143, I.144, R.173 Chain B: R.173, N.174, Q.175 Ligands: GOL.110 Ligand excluded by PLIP GOL.13: 6 residues within 4Å: Chain A: D.252, S.253, G.255, G.303, A.304 Ligands: GOL.8 Ligand excluded by PLIP GOL.14: 5 residues within 4Å: Chain A: P.121, G.123, K.124, E.279, R.280 Ligand excluded by PLIP GOL.15: 7 residues within 4Å: Chain A: K.142, H.143 Chain D: N.174 Chain F: K.142, H.143 Ligands: GOL.107, GOL.110 Ligand excluded by PLIP GOL.22: 8 residues within 4Å: Chain B: V.42, P.43, V.46, K.93 Chain E: Q.48, F.49, R.50, R.64 Ligand excluded by PLIP GOL.23: 5 residues within 4Å: Chain B: K.183, G.184, G.185, S.190, P.194 Ligand excluded by PLIP GOL.24: 10 residues within 4Å: Chain B: R.45, S.72, P.76, Y.77, D.147, T.148 Chain C: R.170, N.174, Q.175, W.176 Ligand excluded by PLIP GOL.25: 7 residues within 4Å: Chain B: L.105, G.107, D.414, C.415, N.418, K.448 Ligands: PEG.37 Ligand excluded by PLIP GOL.26: 8 residues within 4Å: Chain B: A.152, G.153, T.181, G.182, R.193, P.194, N.231 Ligands: NDP.20 Ligand excluded by PLIP GOL.27: 6 residues within 4Å: Chain B: R.305, T.321, Q.322, N.323 Ligands: NDP.20, GOL.32 Ligand excluded by PLIP GOL.28: 3 residues within 4Å: Chain B: W.399, E.403, R.407 Ligand excluded by PLIP GOL.29: 3 residues within 4Å: Chain B: E.11, Y.14, S.41 Ligand excluded by PLIP GOL.30: 5 residues within 4Å: Chain B: Y.33, T.447, K.448, A.451 Ligands: PEG.37 Ligand excluded by PLIP GOL.31: 8 residues within 4Å: Chain B: K.142, H.143, I.144, R.173 Chain C: R.173, N.174, Q.175 Ligands: GOL.91 Ligand excluded by PLIP GOL.32: 6 residues within 4Å: Chain B: D.252, S.253, G.255, G.303, A.304 Ligands: GOL.27 Ligand excluded by PLIP GOL.33: 5 residues within 4Å: Chain B: P.121, G.123, K.124, E.279, R.280 Ligand excluded by PLIP GOL.34: 7 residues within 4Å: Chain B: K.142, H.143 Chain E: K.142, H.143 Chain F: N.174 Ligands: GOL.88, GOL.91 Ligand excluded by PLIP GOL.41: 8 residues within 4Å: Chain C: V.42, P.43, V.46, K.93 Chain D: Q.48, F.49, R.50, R.64 Ligand excluded by PLIP GOL.42: 5 residues within 4Å: Chain C: K.183, G.184, G.185, S.190, P.194 Ligand excluded by PLIP GOL.43: 10 residues within 4Å: Chain A: R.170, N.174, Q.175, W.176 Chain C: R.45, S.72, P.76, Y.77, D.147, T.148 Ligand excluded by PLIP GOL.44: 7 residues within 4Å: Chain C: L.105, G.107, D.414, C.415, N.418, K.448 Ligands: PEG.56 Ligand excluded by PLIP GOL.45: 8 residues within 4Å: Chain C: A.152, G.153, T.181, G.182, R.193, P.194, N.231 Ligands: NDP.39 Ligand excluded by PLIP GOL.46: 6 residues within 4Å: Chain C: R.305, T.321, Q.322, N.323 Ligands: NDP.39, GOL.51 Ligand excluded by PLIP GOL.47: 3 residues within 4Å: Chain C: W.399, E.403, R.407 Ligand excluded by PLIP GOL.48: 3 residues within 4Å: Chain C: E.11, Y.14, S.41 Ligand excluded by PLIP GOL.49: 5 residues within 4Å: Chain C: Y.33, T.447, K.448, A.451 Ligands: PEG.56 Ligand excluded by PLIP GOL.50: 8 residues within 4Å: Chain A: R.173, N.174, Q.175 Chain C: K.142, H.143, I.144, R.173 Ligands: GOL.72 Ligand excluded by PLIP GOL.51: 6 residues within 4Å: Chain C: D.252, S.253, G.255, G.303, A.304 Ligands: GOL.46 Ligand excluded by PLIP GOL.52: 5 residues within 4Å: Chain C: P.121, G.123, K.124, E.279, R.280 Ligand excluded by PLIP GOL.53: 7 residues within 4Å: Chain C: K.142, H.143 Chain D: K.142, H.143 Chain E: N.174 Ligands: GOL.69, GOL.72 Ligand excluded by PLIP GOL.60: 8 residues within 4Å: Chain C: Q.48, F.49, R.50, R.64 Chain D: V.42, P.43, V.46, K.93 Ligand excluded by PLIP GOL.61: 5 residues within 4Å: Chain D: K.183, G.184, G.185, S.190, P.194 Ligand excluded by PLIP GOL.62: 10 residues within 4Å: Chain D: R.45, S.72, P.76, Y.77, D.147, T.148 Chain E: R.170, N.174, Q.175, W.176 Ligand excluded by PLIP GOL.63: 7 residues within 4Å: Chain D: L.105, G.107, D.414, C.415, N.418, K.448 Ligands: PEG.75 Ligand excluded by PLIP GOL.64: 8 residues within 4Å: Chain D: A.152, G.153, T.181, G.182, R.193, P.194, N.231 Ligands: NDP.58 Ligand excluded by PLIP GOL.65: 6 residues within 4Å: Chain D: R.305, T.321, Q.322, N.323 Ligands: NDP.58, GOL.70 Ligand excluded by PLIP GOL.66: 3 residues within 4Å: Chain D: W.399, E.403, R.407 Ligand excluded by PLIP GOL.67: 3 residues within 4Å: Chain D: E.11, Y.14, S.41 Ligand excluded by PLIP GOL.68: 5 residues within 4Å: Chain D: Y.33, T.447, K.448, A.451 Ligands: PEG.75 Ligand excluded by PLIP GOL.69: 8 residues within 4Å: Chain D: K.142, H.143, I.144, R.173 Chain E: R.173, N.174, Q.175 Ligands: GOL.53 Ligand excluded by PLIP GOL.70: 6 residues within 4Å: Chain D: D.252, S.253, G.255, G.303, A.304 Ligands: GOL.65 Ligand excluded by PLIP GOL.71: 5 residues within 4Å: Chain D: P.121, G.123, K.124, E.279, R.280 Ligand excluded by PLIP GOL.72: 7 residues within 4Å: Chain A: N.174 Chain C: K.142, H.143 Chain D: K.142, H.143 Ligands: GOL.50, GOL.53 Ligand excluded by PLIP GOL.79: 8 residues within 4Å: Chain B: Q.48, F.49, R.50, R.64 Chain E: V.42, P.43, V.46, K.93 Ligand excluded by PLIP GOL.80: 5 residues within 4Å: Chain E: K.183, G.184, G.185, S.190, P.194 Ligand excluded by PLIP GOL.81: 10 residues within 4Å: Chain E: R.45, S.72, P.76, Y.77, D.147, T.148 Chain F: R.170, N.174, Q.175, W.176 Ligand excluded by PLIP GOL.82: 7 residues within 4Å: Chain E: L.105, G.107, D.414, C.415, N.418, K.448 Ligands: PEG.94 Ligand excluded by PLIP GOL.83: 8 residues within 4Å: Chain E: A.152, G.153, T.181, G.182, R.193, P.194, N.231 Ligands: NDP.77 Ligand excluded by PLIP GOL.84: 6 residues within 4Å: Chain E: R.305, T.321, Q.322, N.323 Ligands: NDP.77, GOL.89 Ligand excluded by PLIP GOL.85: 3 residues within 4Å: Chain E: W.399, E.403, R.407 Ligand excluded by PLIP GOL.86: 3 residues within 4Å: Chain E: E.11, Y.14, S.41 Ligand excluded by PLIP GOL.87: 5 residues within 4Å: Chain E: Y.33, T.447, K.448, A.451 Ligands: PEG.94 Ligand excluded by PLIP GOL.88: 8 residues within 4Å: Chain E: K.142, H.143, I.144, R.173 Chain F: R.173, N.174, Q.175 Ligands: GOL.34 Ligand excluded by PLIP GOL.89: 6 residues within 4Å: Chain E: D.252, S.253, G.255, G.303, A.304 Ligands: GOL.84 Ligand excluded by PLIP GOL.90: 5 residues within 4Å: Chain E: P.121, G.123, K.124, E.279, R.280 Ligand excluded by PLIP GOL.91: 7 residues within 4Å: Chain B: K.142, H.143 Chain C: N.174 Chain E: K.142, H.143 Ligands: GOL.31, GOL.34 Ligand excluded by PLIP GOL.98: 8 residues within 4Å: Chain A: Q.48, F.49, R.50, R.64 Chain F: V.42, P.43, V.46, K.93 Ligand excluded by PLIP GOL.99: 5 residues within 4Å: Chain F: K.183, G.184, G.185, S.190, P.194 Ligand excluded by PLIP GOL.100: 10 residues within 4Å: Chain D: R.170, N.174, Q.175, W.176 Chain F: R.45, S.72, P.76, Y.77, D.147, T.148 Ligand excluded by PLIP GOL.101: 7 residues within 4Å: Chain F: L.105, G.107, D.414, C.415, N.418, K.448 Ligands: PEG.113 Ligand excluded by PLIP GOL.102: 8 residues within 4Å: Chain F: A.152, G.153, T.181, G.182, R.193, P.194, N.231 Ligands: NDP.96 Ligand excluded by PLIP GOL.103: 6 residues within 4Å: Chain F: R.305, T.321, Q.322, N.323 Ligands: NDP.96, GOL.108 Ligand excluded by PLIP GOL.104: 3 residues within 4Å: Chain F: W.399, E.403, R.407 Ligand excluded by PLIP GOL.105: 3 residues within 4Å: Chain F: E.11, Y.14, S.41 Ligand excluded by PLIP GOL.106: 5 residues within 4Å: Chain F: Y.33, T.447, K.448, A.451 Ligands: PEG.113 Ligand excluded by PLIP GOL.107: 8 residues within 4Å: Chain D: R.173, N.174, Q.175 Chain F: K.142, H.143, I.144, R.173 Ligands: GOL.15 Ligand excluded by PLIP GOL.108: 6 residues within 4Å: Chain F: D.252, S.253, G.255, G.303, A.304 Ligands: GOL.103 Ligand excluded by PLIP GOL.109: 5 residues within 4Å: Chain F: P.121, G.123, K.124, E.279, R.280 Ligand excluded by PLIP GOL.110: 7 residues within 4Å: Chain A: K.142, H.143 Chain B: N.174 Chain F: K.142, H.143 Ligands: GOL.12, GOL.15 Ligand excluded by PLIP

24 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.16: 9 residues within 4Å: Chain A: W.176, G.188, G.189, Q.392, N.393, R.396, L.397, S.398 Chain C: N.109 Ligand excluded by PLIP PEG.17: 4 residues within 4Å: Chain A: G.263, S.264, E.269, K.297 Ligand excluded by PLIP PEG.18: 8 residues within 4Å: Chain A: G.107, L.108, N.109, K.448 Chain B: G.185, S.186 Ligands: GOL.6, GOL.11 Ligand excluded by PLIP PEG.19: 5 residues within 4Å: Chain A: Y.203, E.206, H.207, K.409, R.413 Ligand excluded by PLIP PEG.35: 9 residues within 4Å: Chain A: N.109 Chain B: W.176, G.188, G.189, Q.392, N.393, R.396, L.397, S.398 Ligand excluded by PLIP PEG.36: 4 residues within 4Å: Chain B: G.263, S.264, E.269, K.297 Ligand excluded by PLIP PEG.37: 8 residues within 4Å: Chain B: G.107, L.108, N.109, K.448 Chain C: G.185, S.186 Ligands: GOL.25, GOL.30 Ligand excluded by PLIP PEG.38: 5 residues within 4Å: Chain B: Y.203, E.206, H.207, K.409, R.413 Ligand excluded by PLIP PEG.54: 9 residues within 4Å: Chain B: N.109 Chain C: W.176, G.188, G.189, Q.392, N.393, R.396, L.397, S.398 Ligand excluded by PLIP PEG.55: 4 residues within 4Å: Chain C: G.263, S.264, E.269, K.297 Ligand excluded by PLIP PEG.56: 8 residues within 4Å: Chain A: G.185, S.186 Chain C: G.107, L.108, N.109, K.448 Ligands: GOL.44, GOL.49 Ligand excluded by PLIP PEG.57: 5 residues within 4Å: Chain C: Y.203, E.206, H.207, K.409, R.413 Ligand excluded by PLIP PEG.73: 9 residues within 4Å: Chain D: W.176, G.188, G.189, Q.392, N.393, R.396, L.397, S.398 Chain F: N.109 Ligand excluded by PLIP PEG.74: 4 residues within 4Å: Chain D: G.263, S.264, E.269, K.297 Ligand excluded by PLIP PEG.75: 8 residues within 4Å: Chain D: G.107, L.108, N.109, K.448 Chain E: G.185, S.186 Ligands: GOL.63, GOL.68 Ligand excluded by PLIP PEG.76: 5 residues within 4Å: Chain D: Y.203, E.206, H.207, K.409, R.413 Ligand excluded by PLIP PEG.92: 9 residues within 4Å: Chain D: N.109 Chain E: W.176, G.188, G.189, Q.392, N.393, R.396, L.397, S.398 Ligand excluded by PLIP PEG.93: 4 residues within 4Å: Chain E: G.263, S.264, E.269, K.297 Ligand excluded by PLIP PEG.94: 8 residues within 4Å: Chain E: G.107, L.108, N.109, K.448 Chain F: G.185, S.186 Ligands: GOL.82, GOL.87 Ligand excluded by PLIP PEG.95: 5 residues within 4Å: Chain E: Y.203, E.206, H.207, K.409, R.413 Ligand excluded by PLIP PEG.111: 9 residues within 4Å: Chain E: N.109 Chain F: W.176, G.188, G.189, Q.392, N.393, R.396, L.397, S.398 Ligand excluded by PLIP PEG.112: 4 residues within 4Å: Chain F: G.263, S.264, E.269, K.297 Ligand excluded by PLIP PEG.113: 8 residues within 4Å: Chain D: G.185, S.186 Chain F: G.107, L.108, N.109, K.448 Ligands: GOL.101, GOL.106 Ligand excluded by PLIP PEG.114: 5 residues within 4Å: Chain F: Y.203, E.206, H.207, K.409, R.413 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prakash, P. et al., Structural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase. J. Biol. Chem. (2018)

Release Date

2018-03-21

Peptides

Glutamate dehydrogenase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Glutamate dehydrogenase

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