SMTL ID : 5xwe.1

Structure of a three finger toxin from Ophiophagus hannah venom

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: K.26, E.28, T.36, Y.46, M.60, G.61, C.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.26, A:C.62 GOL.5: 6 residues within 4Å: Chain B: K.26, T.36, Y.46, M.60, G.61, C.62 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.46, B:Y.46, B:C.62

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: K.66 Ligands: CL.4 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: E.42 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: E.42, D.43, A.44 Ligands: CL.2 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: R.22, D.79 Ligands: CL.7, ZN.8 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: R.22, D.79 Ligands: CL.6, ZN.8 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.8: 3 residues within 4Å: Chain B: D.79 Ligands: CL.6, CL.7 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.79, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jobichen, C. et al., Structure of a three finger toxin from Ophiophagus hannah venom. To Be Published

Release Date

2018-07-11

Peptides

Weak toxin DE-1 homolog 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Weak toxin DE-1 homolog 1