SMTL ID : 5xxl.1

Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.680, V.682 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.680, A:V.682, H2O.2, H2O.2, H2O.4, H2O.9 MG.4: 2 residues within 4Å: Chain B: D.680, V.682 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.680, B:V.682, H2O.30, H2O.31, H2O.33, H2O.34

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 1 residues within 4Å: Chain A: R.352 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.352

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 5 residues within 4Å: Chain A: F.13, A.16, L.17, K.20, L.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishiguro, R. et al., Function and structure relationships of a beta-1,2-glucooligosaccharide-degrading beta-glucosidase. FEBS Lett. (2017)

Release Date

2017-12-13

Peptides

Periplasmic beta-glucosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Periplasmic beta-glucosidase

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