SMTL ID : 5xyr.1

Crystal structure of a serine protease from Streptococcus species

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: D.1017, Q.1019, D.1042, R.1043, D.1110, N.1114 Ligand excluded by PLIP

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: S.1190, N.1192, D.1194, N.1196, K.1197, D.1198 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.1190, A:S.1190, A:D.1194, A:N.1196, A:D.1198 CA.3: 5 residues within 4Å: Chain A: N.351, G.400, L.401, V.402, L.584 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:G.400 CA.4: 5 residues within 4Å: Chain A: S.908, N.910, D.912, N.914, D.916 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.908, A:S.908, A:D.912, A:N.914, A:D.916

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 7 residues within 4Å: Chain A: Q.354, Y.589, L.590, D.696, Y.698, S.700, S.702 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.354, A:Q.354, A:L.590, A:D.696, A:S.700, A:S.702, A:S.702

1 x MLA: MALONIC ACID(Non-covalent)

MLA.6: 9 residues within 4Å: Chain A: Y.999, V.1002, V.1003, G.1004, A.1005, Q.1494, T.1496, V.1565, E.1567 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.999, A:V.1565 Hydrogen bonds: A:A.1005, A:A.1005, A:E.1567 Salt bridges: A:H.1498

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jobichen, C. et al., Structure of ScpC, a virulence protease fromStreptococcus pyogenes, reveals the functional domains and maturation mechanism. Biochem. J. (2018)

Release Date

2018-08-08

Peptides

Chemokine protease C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chemokine protease C