SMTL ID : 5y0s.1 (1 other biounit)

Crystal structure of apo Thermotoga maritima TmcAL(Form II)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: K.332, Q.335, L.359, V.379 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.332, A:Q.335 EDO.2: 4 residues within 4Å: Chain A: I.182, T.331, K.332 Ligands: EDO.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.331 EDO.3: 6 residues within 4Å: Chain A: M.365, S.366, L.367, Y.368, R.369, K.370 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.367, A:R.369, A:K.370 EDO.4: 6 residues within 4Å: Chain A: F.319, E.320, F.325, E.386, L.390, K.393 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.393, A:K.393 EDO.5: 5 residues within 4Å: Chain A: A.357, L.359, P.360, I.361, L.377 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.361 EDO.6: 3 residues within 4Å: Chain A: S.366, L.367, K.370 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.370 EDO.7: 4 residues within 4Å: Chain A: F.53, R.239, R.245, R.412 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.245, A:R.412, A:R.412 Water bridges: A:A.54, A:R.239 EDO.8: 7 residues within 4Å: Chain B: F.319, E.320, V.321, N.322, F.325, L.390, K.393 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.322, B:K.393, B:K.393 EDO.9: 7 residues within 4Å: Chain B: E.251, G.254, D.255, S.292, Y.293, R.294 Ligands: EDO.13 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.255, B:Y.293, B:R.294 EDO.10: 5 residues within 4Å: Chain B: L.297, E.298, F.307, R.311 Ligands: EDO.13 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.298, B:R.311 EDO.11: 5 residues within 4Å: Chain A: F.256, F.401 Chain B: D.255, F.256, F.401 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Water bridges: B:D.255, B:D.255, B:F.256, A:F.256 EDO.12: 3 residues within 4Å: Chain B: I.182, T.331, K.332 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.331 EDO.13: 5 residues within 4Å: Chain B: E.251, Y.293, R.294 Ligands: EDO.9, EDO.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taniguchi, T. et al., Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol. (2018)

Release Date

2018-07-18

Peptides

Thermotoga maritima TmcAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thermotoga maritima TmcAL

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