SMTL ID : 5y7m.2 (1 other biounit)

Crystal structure of PhoRpp38 bound to a K-turn in P12.1 helix

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.46 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.46 SO4.2: 1 residues within 4Å: Chain A: R.109 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.109 SO4.3: 3 residues within 4Å: Chain A: K.32, I.33, R.34 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.33, A:R.34 SO4.5: 5 residues within 4Å: Chain A: E.94 Chain B: C.15, A.16, G.17, U.32 No protein-ligand interaction detected (PLIP) SO4.6: 1 residues within 4Å: Chain B: A.40 No protein-ligand interaction detected (PLIP) SO4.7: 5 residues within 4Å: Chain B: G.6, U.7, U.8, A.9, A.40 No protein-ligand interaction detected (PLIP)

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-functional Binders)

GTP.4: 2 residues within 4Å: Chain B: G.1, C.51 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oshima, K. et al., Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K-turn motif. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-02-07

Peptides

50S ribosomal protein L7Ae: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

50S ribosomal protein L7Ae

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