SMTL ID : 5y9d.1

Crystal structure of acyl-coA oxidase1 from Yarrowia lipolytica

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 30 residues within 4Å: Chain A: F.166, M.168, T.169, H.173, G.174, S.175, W.206, I.207, G.208, N.267, V.459, T.462, W.463, E.464, D.466, N.468, V.469, L.472 Chain B: R.337, Q.339, F.340, I.351, Y.354, H.357, R.360, Q.437, A.438, G.440, G.441, Y.444 22 PLIP interactions: 12 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:W.206, A:V.459, A:W.463, B:Y.444, B:Y.444 Hydrogen bonds: A:F.166, A:M.168, A:T.169, A:T.169, A:S.175, A:G.208, A:E.464, A:D.466, B:R.360, B:R.360, B:Q.437, B:G.441 Water bridges: A:N.468, B:R.337, B:R.337 Salt bridges: B:R.337, B:R.337 FAD.2: 29 residues within 4Å: Chain A: R.337, Q.339, F.340, I.351, Y.354, H.357, R.360, Q.437, A.438, G.440, G.441, Y.444 Chain B: F.166, M.168, T.169, H.173, G.174, S.175, W.206, I.207, G.208, N.267, V.459, T.462, W.463, D.466, N.468, V.469, L.472 19 PLIP interactions: 10 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:W.206, B:V.459, B:W.463, A:Y.444 Hydrogen bonds: B:F.166, B:M.168, B:T.169, B:T.169, B:S.175, B:G.208, B:D.466, A:Q.339, A:R.360, A:R.360, A:Q.437, A:G.440, A:G.441 Salt bridges: A:R.337, A:R.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S. et al., Structural insight into the substrate specificity of acyl-CoA oxidase1 from Yarrowia lipolytica for short-chain dicarboxylyl-CoAs. Biochem. Biophys. Res. Commun. (2018)

Release Date

2018-01-03

Peptides

Acyl-coenzyme A oxidase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acyl-coenzyme A oxidase 1