SMTL ID : 5ycd.1 (1 other biounit)

Crystal structure of Poecilia reticulata adenylate kinase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.1: 32 residues within 4Å: Chain A: G.16, P.17, G.18, S.19, G.20, K.21, G.22, T.23, S.39, G.40, L.43, R.44, M.61, E.65, L.66, V.67, V.72, G.94, Y.95, R.97, Q.101, R.128, L.129, R.132, R.138, R.149, S.175, L.177, A.178, V.179, V.182 Ligands: MG.2 39 PLIP interactions: 39 interactions with chain A Hydrogen bonds: A:G.18, A:S.19, A:G.20, A:K.21, A:G.22, A:T.23, A:T.23, A:S.39, A:G.40, A:V.67, A:R.97, A:Q.101, A:Q.101, A:R.128, A:R.132, A:R.149, A:L.177 Water bridges: A:T.23, A:R.44, A:R.44, A:M.61, A:R.97, A:R.97, A:R.97, A:K.131, A:V.179 Salt bridges: A:K.21, A:K.21, A:K.21, A:R.44, A:R.97, A:R.97, A:R.132, A:R.138, A:R.138, A:R.138, A:R.149 pi-Cation interactions: A:R.128, A:R.128

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Ligands: AP5.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bae, E. et al., Crystal structure of Poecilia reticulata adenylate kinase. To Be Published

Release Date

2018-09-12

Peptides

Adenylayte kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenylayte kinase

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