SMTL ID : 5yci.1 (1 other biounit)

Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: T.43, K.46, F.47, K.49, H.68, T.71, V.72, A.75, L.76, L.93, S.96, H.97, H.101, I.103, Y.107, L.108, I.111, F.142 25 PLIP interactions: 24 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:T.43, A:F.47, A:F.47, A:F.47, A:T.71, A:V.72, A:A.75, A:L.93, A:L.93, A:I.103, A:Y.107, A:L.108, A:I.111, A:F.142, A:F.142 Hydrogen bonds: A:S.96 Water bridges: A:H.68, A:K.100 Salt bridges: A:K.49, A:H.97, A:H.101 pi-Stacking: A:H.68, A:H.101 Metal complexes: A:H.97, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Isogai, Y. et al., Tracing whale myoglobin evolution by resurrecting ancient proteins. Sci Rep (2018)

Release Date

2018-09-19

Peptides

Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly)

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