SMTL ID : 5yk6.1

Crystal Structure of Mmm1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

4 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE(Non-covalent)

3PH.1: 20 residues within 4Å: Chain A: V.240, W.241, P.242, R.243, S.244 Chain B: I.54, S.57, F.61, R.64, L.118, V.120, V.144, S.145, I.146, F.149, F.183, I.219, W.222, R.226 Ligands: 3PH.2 21 PLIP interactions: 13 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:I.54, B:L.118, B:L.118, B:V.144, B:I.146, B:F.149, B:F.183, B:I.219, B:I.219, B:W.222, B:W.222, A:W.241, A:W.241, A:W.241 Hydrogen bonds: B:R.64, A:S.244, A:S.244, A:S.244 Salt bridges: B:R.226, A:R.243, A:R.243 3PH.2: 12 residues within 4Å: Chain A: L.157, Y.179, P.238, S.239, V.240, W.241 Chain B: F.33, I.37, L.44, V.155 Ligands: 3PH.1, 3PH.4 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:L.157, A:V.240, A:V.240, A:W.241, B:F.33, B:I.37, B:I.37, B:V.155 Hydrogen bonds: B:T.40 3PH.3: 20 residues within 4Å: Chain A: I.54, S.57, F.61, R.64, L.118, V.120, V.144, S.145, I.146, F.149, F.183, I.219, W.222, R.226 Chain B: V.240, W.241, P.242, R.243, S.244 Ligands: 3PH.4 21 PLIP interactions: 13 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:I.54, A:L.118, A:L.118, A:V.144, A:I.146, A:F.149, A:F.183, A:I.219, A:I.219, A:W.222, A:W.222, B:W.241, B:W.241, B:W.241 Hydrogen bonds: A:R.64, B:S.244, B:S.244, B:S.244 Salt bridges: A:R.226, B:R.243, B:R.243 3PH.4: 12 residues within 4Å: Chain A: F.33, I.37, L.44, V.155 Chain B: L.157, Y.179, P.238, S.239, V.240, W.241 Ligands: 3PH.2, 3PH.3 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.33, A:I.37, A:I.37, A:V.155, B:L.157, B:V.240, B:V.240, B:W.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeong, H. et al., Crystal structures of Mmm1 and Mdm12-Mmm1 reveal mechanistic insight into phospholipid trafficking at ER-mitochondria contact sites. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2018-01-10

Peptides

Maintenance of mitochondrial morphology protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Maintenance of mitochondrial morphology protein 1

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