SMTL ID : 5yl1.5 (5 other biounits)

T=1 subviral particle of Penaeus vannamei nodavirus capsid protein deletion mutant (delta 1-37 & 251-368)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.12 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.53, T.131, Q.183, N.185 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.53 CA.2: 2 residues within 4Å: Chain A: E.53, Q.183 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, N.C. et al., The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism. Commun Biol (2019)

Release Date

2018-12-12

Peptides

Capsid protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Capsid protein

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