SMTL ID : 5yqh.2 (3 other biounits)

The crystal structure of CYP199A4 binding with 4-n-Propyl benzoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: I.98, L.99, H.106, R.110, F.161, A.249, G.250, T.253, T.254, P.295, V.296, F.299, R.301, L.324, G.351, F.352, G.353, V.356, H.357, C.359, V.360, G.361, V.364, A.365 Ligands: 8ZX.2 18 PLIP interactions: 17 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:I.98, A:L.99, A:F.161, A:A.249, A:P.295, A:V.296, A:L.324, A:F.352, A:V.360, A:V.364 Water bridges: A:H.357 Salt bridges: A:H.106, A:R.110, A:R.301, A:H.357, A:H.357 Metal complexes: A:C.359, H2O.4

3 x 8ZX: 4-methoxybenzamide(Non-covalent)

8ZX.2: 11 residues within 4Å: Chain A: R.93, S.96, L.99, V.182, F.183, L.241, R.244, S.245, S.248, A.249 Ligands: HEM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.99, A:L.99, A:V.182, A:A.249 Hydrogen bonds: A:R.93, A:R.244, A:S.248 8ZX.3: 2 residues within 4Å: Chain A: R.61, R.332 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.61 Water bridges: A:D.44 8ZX.4: 5 residues within 4Å: Chain A: L.176, P.177, G.180, D.252, R.392 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.176, A:P.177 Hydrogen bonds: A:D.252, A:D.252 pi-Cation interactions: A:R.392

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: R.93, Y.178, Q.204, R.244 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 10 residues within 4Å: Chain A: R.110, S.114, L.117, S.118, P.119, C.359, V.360, Q.362, L.363 Ligands: SO4.9 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.110, A:S.114, A:S.114 Water bridges: A:Q.362, A:L.363 GOL.7: 4 residues within 4Å: Chain A: F.268, P.269, G.270, E.271 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.270

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 1 residues within 4Å: Chain A: R.108 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.108, A:R.108, A:R.108, A:R.108 Salt bridges: A:R.108 SO4.9: 3 residues within 4Å: Chain A: R.110, S.114 Ligands: GOL.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.114, A:S.114 Water bridges: A:R.110, A:R.110, A:V.356 Salt bridges: A:R.110 SO4.10: 3 residues within 4Å: Chain A: H.66, G.348, S.354 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.70, A:S.354 Water bridges: A:G.355, A:G.355 Salt bridges: A:H.66 SO4.11: 3 residues within 4Å: Chain A: H.66, A.67, N.70 4 PLIP interactions: 4 interactions with chain A Water bridges: A:A.67, A:A.67, A:A.67 Salt bridges: A:H.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coleman, T. et al., The crystal structure of CYP199A4 binding with 4-n-Propyl benzoic acid. To Be Published

Release Date

2019-02-27

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytochrome P450

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