SMTL ID : 5yr1.1

Crystal Structure of Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

homo-12-mer

Ligands

72 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.2: 6 residues within 4Å: Chain A: N.28, W.38, S.114, P.115, P.231 Chain I: Q.138 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: E.217, I.235 Chain B: F.100 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: Y.25, N.28, N.29, P.115, L.244 Chain I: Q.138 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain B: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain B: N.28, W.38, S.114, P.115, P.231 Chain L: Q.138 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: F.100 Chain B: E.217, I.235 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain B: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain B: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain B: Y.25, N.28, N.29, P.115, L.244 Chain L: Q.138 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain C: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain C: N.28, W.38, S.114, P.115, P.231 Chain J: Q.138 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain C: E.217, I.235 Chain D: F.100 Ligand excluded by PLIP EDO.16: 5 residues within 4Å: Chain C: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain C: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.18: 6 residues within 4Å: Chain C: Y.25, N.28, N.29, P.115, L.244 Chain J: Q.138 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain D: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain D: N.28, W.38, S.114, P.115, P.231 Chain K: Q.138 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain C: F.100 Chain D: E.217, I.235 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain D: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.23: 5 residues within 4Å: Chain D: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.24: 6 residues within 4Å: Chain D: Y.25, N.28, N.29, P.115, L.244 Chain K: Q.138 Ligand excluded by PLIP EDO.25: 6 residues within 4Å: Chain E: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.26: 6 residues within 4Å: Chain A: Q.138 Chain E: N.28, W.38, S.114, P.115, P.231 Ligand excluded by PLIP EDO.27: 3 residues within 4Å: Chain E: E.217, I.235 Chain F: F.100 Ligand excluded by PLIP EDO.28: 5 residues within 4Å: Chain E: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.29: 5 residues within 4Å: Chain E: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.30: 6 residues within 4Å: Chain A: Q.138 Chain E: Y.25, N.28, N.29, P.115, L.244 Ligand excluded by PLIP EDO.31: 6 residues within 4Å: Chain F: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.32: 6 residues within 4Å: Chain D: Q.138 Chain F: N.28, W.38, S.114, P.115, P.231 Ligand excluded by PLIP EDO.33: 3 residues within 4Å: Chain E: F.100 Chain F: E.217, I.235 Ligand excluded by PLIP EDO.34: 5 residues within 4Å: Chain F: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.35: 5 residues within 4Å: Chain F: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.36: 6 residues within 4Å: Chain D: Q.138 Chain F: Y.25, N.28, N.29, P.115, L.244 Ligand excluded by PLIP EDO.37: 6 residues within 4Å: Chain G: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.38: 6 residues within 4Å: Chain B: Q.138 Chain G: N.28, W.38, S.114, P.115, P.231 Ligand excluded by PLIP EDO.39: 3 residues within 4Å: Chain G: E.217, I.235 Chain H: F.100 Ligand excluded by PLIP EDO.40: 5 residues within 4Å: Chain G: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.41: 5 residues within 4Å: Chain G: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.42: 6 residues within 4Å: Chain B: Q.138 Chain G: Y.25, N.28, N.29, P.115, L.244 Ligand excluded by PLIP EDO.43: 6 residues within 4Å: Chain H: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.44: 6 residues within 4Å: Chain C: Q.138 Chain H: N.28, W.38, S.114, P.115, P.231 Ligand excluded by PLIP EDO.45: 3 residues within 4Å: Chain G: F.100 Chain H: E.217, I.235 Ligand excluded by PLIP EDO.46: 5 residues within 4Å: Chain H: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.47: 5 residues within 4Å: Chain H: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.48: 6 residues within 4Å: Chain C: Q.138 Chain H: Y.25, N.28, N.29, P.115, L.244 Ligand excluded by PLIP EDO.49: 6 residues within 4Å: Chain I: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.50: 6 residues within 4Å: Chain E: Q.138 Chain I: N.28, W.38, S.114, P.115, P.231 Ligand excluded by PLIP EDO.51: 3 residues within 4Å: Chain I: E.217, I.235 Chain J: F.100 Ligand excluded by PLIP EDO.52: 5 residues within 4Å: Chain I: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.53: 5 residues within 4Å: Chain I: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.54: 6 residues within 4Å: Chain E: Q.138 Chain I: Y.25, N.28, N.29, P.115, L.244 Ligand excluded by PLIP EDO.55: 6 residues within 4Å: Chain J: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.56: 6 residues within 4Å: Chain H: Q.138 Chain J: N.28, W.38, S.114, P.115, P.231 Ligand excluded by PLIP EDO.57: 3 residues within 4Å: Chain I: F.100 Chain J: E.217, I.235 Ligand excluded by PLIP EDO.58: 5 residues within 4Å: Chain J: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.59: 5 residues within 4Å: Chain J: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.60: 6 residues within 4Å: Chain H: Q.138 Chain J: Y.25, N.28, N.29, P.115, L.244 Ligand excluded by PLIP EDO.61: 6 residues within 4Å: Chain K: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.62: 6 residues within 4Å: Chain F: Q.138 Chain K: N.28, W.38, S.114, P.115, P.231 Ligand excluded by PLIP EDO.63: 3 residues within 4Å: Chain K: E.217, I.235 Chain L: F.100 Ligand excluded by PLIP EDO.64: 5 residues within 4Å: Chain K: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.65: 5 residues within 4Å: Chain K: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.66: 6 residues within 4Å: Chain F: Q.138 Chain K: Y.25, N.28, N.29, P.115, L.244 Ligand excluded by PLIP EDO.67: 6 residues within 4Å: Chain L: R.151, K.152, L.233, N.237, H.238, S.239 Ligand excluded by PLIP EDO.68: 6 residues within 4Å: Chain G: Q.138 Chain L: N.28, W.38, S.114, P.115, P.231 Ligand excluded by PLIP EDO.69: 3 residues within 4Å: Chain K: F.100 Chain L: E.217, I.235 Ligand excluded by PLIP EDO.70: 5 residues within 4Å: Chain L: K.53, I.61, S.62, E.63, R.209 Ligand excluded by PLIP EDO.71: 5 residues within 4Å: Chain L: M.124, A.125, K.126, P.133, E.144 Ligand excluded by PLIP EDO.72: 6 residues within 4Å: Chain G: Q.138 Chain L: Y.25, N.28, N.29, P.115, L.244 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Negishi, H. et al., Supramolecular protein cages constructed from a crystalline protein matrix. Chem. Commun. (Camb.) (2018)

Release Date

2018-02-21

Peptides

Polyhedrin: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

Polyhedrin

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