SMTL ID : 5ys9.1

Crystal structure of acyl-coA oxidase3 from Yarrowia lipolytica

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: F.160, M.162, T.163, H.167, G.168, S.169, W.200, I.201, G.202, N.261, V.450, T.453, W.454, D.457, N.459, V.460, L.463 Chain B: R.331, Q.333, F.334, I.345, Y.348, H.351, R.354, Q.428, A.429, G.431, G.432, Y.435 26 PLIP interactions: 14 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:W.200, A:W.200, A:V.450, A:W.454, B:Y.435, B:Y.435 Hydrogen bonds: A:F.160, A:M.162, A:T.163, A:T.163, A:S.169, A:G.202, A:D.457, B:Q.333, B:R.354, B:R.354, B:Q.428, B:G.431, B:G.432 Water bridges: A:F.160, A:N.459, B:R.331, B:R.331 pi-Stacking: A:W.454 Salt bridges: B:R.331, B:R.331 FAD.2: 27 residues within 4Å: Chain A: R.331, Q.333, F.334, I.345, Y.348, R.354, Q.428, A.429, G.431, G.432, Y.435 Chain B: F.160, M.162, T.163, H.167, G.168, S.169, W.200, G.202, N.261, V.450, T.453, W.454, D.457, N.459, V.460, L.463 22 PLIP interactions: 9 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:Y.435, A:Y.435, B:W.200, B:W.200, B:V.450, B:W.454 Hydrogen bonds: A:R.354, A:R.354, A:Q.428, A:G.431, A:G.432, B:F.160, B:M.162, B:T.163, B:T.163, B:S.169, B:S.169, B:G.202, B:D.457 Salt bridges: A:R.331, A:R.331 Water bridges: B:F.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S. et al., Crystal Structure of Acyl-CoA Oxidase 3 fromYarrowia lipolyticawith Specificity for Short-Chain Acyl-CoA. J. Microbiol. Biotechnol. (2018)

Release Date

2018-02-28

Peptides

Acyl-coenzyme A oxidase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acyl-coenzyme A oxidase 3