SMTL ID : 5yul.2 (4 other biounits)

Native Structure of hSOD1 in P6322 space group

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.64, H.72, H.81, D.84, K.137 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.64, A:H.72, A:H.81, A:D.84, A:D.84 ZN.2: 5 residues within 4Å: Chain B: H.64, H.72, H.81, D.84, K.137 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.64, B:H.72, B:H.81, B:D.84, B:D.84

1 x S4P: Dihydrogen tetrasulfide(Non-covalent)

S4P.3: 3 residues within 4Å: Chain A: C.112 Chain B: C.112, I.114 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain B: H.49, H.121, T.138, G.142, S.143, R.144 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.144 Water bridges: B:H.64, B:H.121, B:T.138, B:T.138, B:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manjula, R. et al., Assessment of ligand binding at a site relevant to SOD1 oxidation and aggregation. FEBS Lett. (2018)

Release Date

2018-11-21

Peptides

Superoxide dismutase [Cu-Zn]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Superoxide dismutase [Cu-Zn]

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