SMTL ID : 5yvd.1

Structural and biochemical characterization of endoribonuclease Nsp15 encoded by Middle East Respiratory Syndrome Coronavirus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: H.231, G.243, G.244, H.246, K.286, T.337 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.231, A:G.244, A:K.286, A:T.337 GOL.2: 6 residues within 4Å: Chain B: H.231, G.243, G.244, H.246, K.286, T.337 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.231, B:G.244, B:K.286, B:T.337 GOL.3: 6 residues within 4Å: Chain C: H.231, G.243, G.244, H.246, K.286, T.337 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:H.231, C:G.244, C:K.286, C:T.337 GOL.4: 7 residues within 4Å: Chain D: H.231, L.242, G.243, G.244, H.246, K.286, T.337 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:H.231, D:G.244, D:K.286 GOL.5: 7 residues within 4Å: Chain E: H.231, L.242, G.243, G.244, H.246, K.286, T.337 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:H.231, E:G.244, E:K.286 GOL.6: 7 residues within 4Å: Chain F: H.231, L.242, G.243, G.244, H.246, K.286, T.337 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:H.231, F:G.244, F:K.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, L. et al., Structural and Biochemical Characterization of Endoribonuclease Nsp15 Encoded by Middle East Respiratory Syndrome Coronavirus. J. Virol. (2018)

Release Date

2018-08-22

Peptides

Nsp15: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
B

E
B

F
B

Nsp15