SMTL ID : 5z0m.1

Crystal structure of copper-bound H63F-mutated tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 12 h at 298 K

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CU: COPPER (II) ION(Non-covalent)

CU.1: 6 residues within 4Å: Chain A: H.38, I.42, H.54, F.63 Chain B: F.98 Ligands: CU.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.38, A:H.54, H2O.12 CU.2: 5 residues within 4Å: Chain A: H.190, H.194, H.216 Chain B: F.98 Ligands: CU.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.190, A:H.194, A:H.216, H2O.12 CU.7: 6 residues within 4Å: Chain A: I.42, M.43 Chain B: H.82, M.84, H.97 Ligands: NO3.8 No protein-ligand interaction detected (PLIP)

6 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 8 residues within 4Å: Chain A: R.132, V.133, D.134, R.140, Q.200, T.203, V.205 Chain B: V.95 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.133, A:D.134, A:R.140 Water bridges: A:D.134, A:Q.200 NO3.4: 7 residues within 4Å: Chain A: Y.165, W.223, W.226, Q.227, A.234, Y.235, L.263 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.227, A:Y.235 NO3.5: 5 residues within 4Å: Chain A: T.238, G.239, D.246, L.247, N.248 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.248, A:N.248 NO3.6: 6 residues within 4Å: Chain A: R.228, H.265, T.266, T.270, F.271, L.274 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.265, A:F.271 NO3.8: 9 residues within 4Å: Chain A: M.43 Chain B: H.82, V.83, M.84, I.92, S.93, V.94, H.97 Ligands: CU.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.97 NO3.9: 4 residues within 4Å: Chain B: T.103, R.105, A.106, R.109 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.103, B:R.105, B:A.106 Water bridges: B:R.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matoba, Y. et al., Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein. To Be Published

Release Date

2018-12-26

Peptides

Tyrosinase: A
MelC: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosinase

MelC

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