SMTL ID : 5z1n.1

Crystal structure of C terminal region of G-protein interacting protein 1 (Gip1) from Dictyostelium discoideum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PEF.1: 23 residues within 4Å: Chain A: I.10, P.11, E.13, G.14, L.17, I.18, V.21, I.44, L.45, F.49, V.65, L.69, L.76, F.129, F.137, F.138, L.151, L.154, Y.161, L.166, I.167, Y.168 Ligands: LHG.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.17, A:I.18, A:V.21, A:I.44, A:L.45, A:V.65, A:L.69, A:L.76, A:F.129, A:F.138, A:L.151, A:L.154, A:Y.161, A:L.166, A:I.167, A:I.167 Hydrogen bonds: A:Y.168 Water bridges: A:Y.168

1 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)

LHG.2: 4 residues within 4Å: Chain A: L.166, I.167, Y.168 Ligands: PEF.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.167 Hydrogen bonds: A:Y.168 Water bridges: A:Y.168

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: D.61, L.62, A.63, K.64, V.65 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.62, A:K.64, A:V.65 Water bridges: A:E.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyagawa, T. et al., Structural basis of Gip1 for cytosolic sequestration of G protein in wide-range chemotaxis. Nat Commun (2018)

Release Date

2018-10-17

Peptides

G-protein interacting protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G-protein interacting protein 1

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