SMTL ID : 5zcr.1 (1 other biounit)

DSM5389 glycosyltrehalose synthase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: E.269, D.460 Ligands: GOL.2, GOL.3, GOL.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.269, A:D.460, H2O.7

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: E.269, I.271, Y.367, E.410, V.426, D.460 Ligands: MG.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.269 Water bridges: A:E.410, A:D.460 GOL.3: 7 residues within 4Å: Chain A: Y.50, V.87, H.90, F.206, D.241 Ligands: MG.1, GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.90 Water bridges: A:R.239, A:D.241, A:D.460 GOL.4: 7 residues within 4Å: Chain A: H.48, Y.50, H.459, D.460, R.614 Ligands: MG.1, GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.460, A:R.614, A:R.614 GOL.5: 4 residues within 4Å: Chain A: L.634, R.700, E.717, H.718 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.700, A:E.717, A:E.717, A:E.717, A:H.718 Water bridges: A:I.715 GOL.6: 5 residues within 4Å: Chain A: D.285, G.286, T.450, I.451, S.452 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.285, A:I.451, A:S.452 GOL.7: 8 residues within 4Å: Chain A: D.411, F.415, D.460, K.462, K.527, E.531, T.609, D.610 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.460, A:K.527, A:E.531, A:D.610 GOL.8: 9 residues within 4Å: Chain A: R.7, Y.35, T.288, T.455, S.457, T.458, H.459, D.596, Y.598 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.288, A:T.288, A:T.455, A:H.459, A:H.459, A:D.596

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okazaki, N. et al., Crystal structure of glycosyltrehalose synthase from Sulfolobus shibatae DSM5389. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-11-21

Peptides

Maltooligosyl trehalose synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltooligosyl trehalose synthase

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