- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Covalent)(Non-covalent)
ANP.2: 22 residues within 4Å:- Chain A: V.139, K.141, G.145, T.146, Q.147, G.148, I.149, V.151, Q.177, E.178, Y.179, I.180, D.187, R.203, F.210, R.211, S.212, N.213, L.250, M.259, E.260
- Ligands: MG.3
16 PLIP interactions:16 interactions with chain A- Hydrogen bonds: A:K.141, A:G.145, A:Q.147, A:G.148, A:I.149, A:Q.177, A:I.180, A:R.203, A:S.212, A:S.212, A:N.213
- Water bridges: A:K.141, A:R.203, A:N.213, A:E.260
- Salt bridges: A:K.141
ANP.5: 20 residues within 4Å:- Chain B: K.100, V.139, K.141, V.151, Q.177, E.178, Y.179, I.180, D.187, R.203, F.210, R.211, S.212, N.213, H.215, R.216, L.250, M.259, E.260
- Ligands: MG.6
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:K.100, B:K.141, B:Q.177, B:I.180, B:R.203, B:S.212, B:S.212, B:N.213, B:N.213, B:R.216, B:R.216
- Water bridges: B:S.212
- Salt bridges: B:K.100, B:K.141
ANP.8: 21 residues within 4Å:- Chain C: K.100, V.139, K.141, G.145, T.146, Q.147, G.148, V.151, Q.177, E.178, Y.179, I.180, D.187, F.210, R.211, S.212, N.213, L.250, M.259, E.260
- Ligands: MG.9
17 PLIP interactions:17 interactions with chain C- Hydrogen bonds: C:K.100, C:K.100, C:K.141, C:T.146, C:G.148, C:Q.177, C:I.180, C:S.212, C:S.212, C:N.213
- Water bridges: C:Q.147, C:Q.147, C:D.248, C:D.248, C:E.260, C:E.260
- Salt bridges: C:K.141
ANP.12: 19 residues within 4Å:- Chain D: K.100, V.139, K.141, V.151, Q.177, E.178, Y.179, I.180, D.187, R.203, F.210, R.211, S.212, N.213, R.216, L.250, M.259, E.260
- Ligands: MG.13
15 PLIP interactions:15 interactions with chain D- Hydrogen bonds: D:K.100, D:K.141, D:E.178, D:I.180, D:D.187, D:D.187, D:R.203, D:R.211, D:S.212, D:N.213, D:R.216, D:E.260
- Water bridges: D:M.259, D:E.260
- Salt bridges: D:K.141
- 4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.3: 1 residues within 4Å:- Ligands: ANP.2
No protein-ligand interaction detected (PLIP)MG.6: 4 residues within 4Å:- Chain B: N.213, D.248, E.260
- Ligands: ANP.5
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:E.260
MG.9: 2 residues within 4Å:- Ligands: ANP.8, SO4.10
No protein-ligand interaction detected (PLIP)MG.13: 6 residues within 4Å:- Chain D: R.203, N.213, D.248, M.259, E.260
- Ligands: ANP.12
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:D.248, D:E.260
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Arimura, Y. et al., Structural polymorphism of the Escherichia coli poly-alpha-L-glutamate synthetase RimK. Acta Crystallogr F Struct Biol Commun (2018)
- Release Date
- 2018-07-25
- Peptides
- Ribosomal protein S6--L-glutamate ligase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Covalent)(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Arimura, Y. et al., Structural polymorphism of the Escherichia coli poly-alpha-L-glutamate synthetase RimK. Acta Crystallogr F Struct Biol Commun (2018)
- Release Date
- 2018-07-25
- Peptides
- Ribosomal protein S6--L-glutamate ligase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H