SMTL ID : 5ze4.1

The structure of holo- structure of DHAD complex with [2Fe-2S] cluster

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.1: 11 residues within 4Å: Chain A: N.63, C.65, S.96, D.97, A.98, C.138, D.139, A.209, C.210, A.216 Ligands: ACT.5 3 PLIP interactions: 3 interactions with chain A, Metal complexes: A:C.65, A:C.138, A:C.210

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.24, W.128 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.24 SO4.3: 3 residues within 4Å: Chain A: P.28, K.29, S.30 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.29, A:S.30 SO4.4: 2 residues within 4Å: Chain A: S.44, D.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.45 Water bridges: A:S.44, A:D.46

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 6 residues within 4Å: Chain A: D.97, F.180, C.210, Y.214 Ligands: FES.1, MG.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.180 Water bridges: A:T.215, A:T.215

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 5 residues within 4Å: Chain A: D.97, D.139, K.140, E.462 Ligands: ACT.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.139, A:E.462

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, Y. et al., Resistance-gene-directed discovery of a natural-product herbicide with a new mode of action. Nature (2018)

Release Date

2018-07-18

Peptides

Dihydroxy-acid dehydratase, chloroplastic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydroxy-acid dehydratase, chloroplastic